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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
14861 and 14862 are separated by 256 nucleotides
14862 and 14863 are separated by 393 nucleotides
14863 and 14864 are separated by 265 nucleotides
14864 and 14865 are separated by 90 nucleotides
mRNA_6493: 14861 - K20301 TRAPPC2, TRS20 trafficking protein particle complex subunit 2, at 920,025 to 920,861
14861
mRNA_6494: 14862 - KOG2885 Uncharacterized conserved protein, at 921,118 to 925,522
14862
mRNA_6495: 14863 - Hypothetical Protein, at 925,916 to 926,829
14863
mRNA_6496: 14864 - HMMPfam-Fungal protein of unknown function (DUF1748)-PF08520, at 927,095 to 927,579
14864
mRNA_6497: 14865 - HMMPfam-Peptidase family M28-PF04389,SUPERFAMILY--SSF53187, at 927,670 to 929,364
14865
Group
Condition
mRNA
_6493
mRNA
_6494
mRNA
_6495
mRNA
_6496
mRNA
_6497
14861
14862
14863
14864
14865
buoyancy on lipid accumulation
40 hrs High Buoyancy
N.D.
-0.4
-0.7
N.D.
+0.1
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
N.D.
-0.7
-0.2
N.D.
-0.1
facs on lipid accumulation
Sorted Low BODIPY Gate
N.D.
-0.0
-0.8
N.D.
+0.0
facs on lipid accumulation
Sorted High BODIPY Gate
N.D.
-0.5
-0.4
N.D.
+0.1
buoyancy on lipid accumulation
40 hrs Median Buoyancy
N.D.
-0.4
-0.2
N.D.
-0.1
facs on lipid accumulation
Sorted No BODIPY Gate
N.D.
-0.1
-0.4
N.D.
+0.2
ypd buoyancy
40 hrs Median Buoyancy
N.D.
-0.2
+0.0
N.D.
+0.1
growth on oleic acid
YNB Oleic Acid
N.D.
+0.0
-0.0
N.D.
-0.1
ypd buoyancy
40 hrs No Buoyancy Separation
N.D.
-0.7
+0.2
N.D.
+0.4
buoyancy on lipid accumulation
40 hrs Low Buoyancy
N.D.
-0.2
-0.1
N.D.
+0.2
ypd buoyancy
40 hrs Low Buoyancy
N.D.
-0.3
+0.2
N.D.
-0.0
ypd buoyancy
40 hrs High Buoyancy
N.D.
-0.3
+0.3
N.D.
+0.0
auxotrophy
YNB Glucose 75mM Arginine
N.D.
+0.1
+0.2
N.D.
-0.1
growth on ypd
YPD
N.D.
-0.0
+0.2
N.D.
-0.0
growth on ricinoleic acid
YNB Ricinoleic Acid
N.D.
+0.1
+0.2
N.D.
-0.1
growth on ricinoleic acid
YNB Glucose
N.D.
-0.0
+0.2
N.D.
+0.1
auxotrophy
YNB Glucose
N.D.
+0.1
+0.5
N.D.
-0.2
growth on oleic acid
YNB Glucose
N.D.
+0.1
+0.2
N.D.
+0.1
auxotrophy
YNB Glucose 75mM Methionine
N.D.
+0.1
+0.2
N.D.
+0.3
growth on ricinoleic acid
YNB Methylricinoleic Acid
N.D.
+0.1
+0.5
N.D.
+0.2
auxotrophy
Dropout Complete
N.D.
+0.1
+0.5
N.D.
+0.2
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