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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
14862 and 14863 are separated by 393 nucleotides
14863 and 14864 are separated by 265 nucleotides
14864 and 14865 are separated by 90 nucleotides
14865 and 14866 are separated by 147 nucleotides
mRNA_6494: 14862 - KOG2885 Uncharacterized conserved protein, at 921,118 to 925,522
14862
mRNA_6495: 14863 - Hypothetical Protein, at 925,916 to 926,829
14863
mRNA_6496: 14864 - HMMPfam-Fungal protein of unknown function (DUF1748)-PF08520, at 927,095 to 927,579
14864
mRNA_6497: 14865 - HMMPfam-Peptidase family M28-PF04389,SUPERFAMILY--SSF53187, at 927,670 to 929,364
14865
mRNA_6498: 14866 - K00226 pyrD dihydroorotate dehydrogenase (fumarate), at 929,512 to 931,049
14866
Group
Condition
mRNA
_6494
mRNA
_6495
mRNA
_6496
mRNA
_6497
mRNA
_6498
14862
14863
14864
14865
14866
ypd buoyancy
40 hrs No Buoyancy Separation
-0.7
+0.2
N.D.
+0.4
-3.7
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-0.7
-0.2
N.D.
-0.1
-0.3
facs on lipid accumulation
Sorted Low BODIPY Gate
-0.0
-0.8
N.D.
+0.0
-0.3
facs on lipid accumulation
Sorted High BODIPY Gate
-0.5
-0.4
N.D.
+0.1
-0.3
buoyancy on lipid accumulation
40 hrs High Buoyancy
-0.4
-0.7
N.D.
+0.1
+0.0
growth on ypd
YPD
-0.0
+0.2
N.D.
-0.0
-0.7
growth on oleic acid
YNB Oleic Acid
+0.0
-0.0
N.D.
-0.1
-0.4
buoyancy on lipid accumulation
40 hrs Median Buoyancy
-0.4
-0.2
N.D.
-0.1
+0.1
facs on lipid accumulation
Sorted No BODIPY Gate
-0.1
-0.4
N.D.
+0.2
+0.0
auxotrophy
YNB Glucose 75mM Arginine
+0.1
+0.2
N.D.
-0.1
-0.5
auxotrophy
YNB Glucose 75mM Methionine
+0.1
+0.2
N.D.
+0.3
-0.8
ypd buoyancy
40 hrs Median Buoyancy
-0.2
+0.0
N.D.
+0.1
-0.1
auxotrophy
YNB Glucose
+0.1
+0.5
N.D.
-0.2
-0.5
buoyancy on lipid accumulation
40 hrs Low Buoyancy
-0.2
-0.1
N.D.
+0.2
-0.0
ypd buoyancy
40 hrs Low Buoyancy
-0.3
+0.2
N.D.
-0.0
+0.1
growth on oleic acid
YNB Glucose
+0.1
+0.2
N.D.
+0.1
-0.2
ypd buoyancy
40 hrs High Buoyancy
-0.3
+0.3
N.D.
+0.0
+0.3
auxotrophy
Dropout Complete
+0.1
+0.5
N.D.
+0.2
-0.4
growth on ricinoleic acid
YNB Ricinoleic Acid
+0.1
+0.2
N.D.
-0.1
+0.4
growth on ricinoleic acid
YNB Glucose
-0.0
+0.2
N.D.
+0.1
+0.4
growth on ricinoleic acid
YNB Methylricinoleic Acid
+0.1
+0.5
N.D.
+0.2
+0.3
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