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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
14867 and 14868 are separated by 1812 nucleotides
14868 and 14869 are separated by 238 nucleotides
14869 and 14870 are separated by 316 nucleotides
14870 and 14871 are separated by 640 nucleotides
mRNA_6499: 14867 - K12668 OST2, DAD1 oligosaccharyltransferase complex subunit epsilon, at 931,103 to 931,809
14867
mRNA_6500: 14868 - K14416 HBS1 elongation factor 1 alpha-like protein, at 933,622 to 935,186
14868
mRNA_6501: 14869 - K06902 UMF1 MFS transporter, UMF1 family, at 935,425 to 937,523
14869
mRNA_6502: 14870 - K02971 RP-S21e, RPS21 small subunit ribosomal protein S21e, at 937,840 to 938,370
14870
mRNA_6503: 14871 - K11360 SPT8 transcriptional activator SPT8, at 939,011 to 940,996
14871
Group
Condition
mRNA
_6499
mRNA
_6500
mRNA
_6501
mRNA
_6502
mRNA
_6503
14867
14868
14869
14870
14871
growth on ricinoleic acid
YNB Glucose
N.D.
-1.3
-0.0
N.D.
-0.3
buoyancy on lipid accumulation
40 hrs Median Buoyancy
N.D.
-0.9
-0.3
N.D.
+0.1
auxotrophy
YNB Glucose 75mM Arginine
N.D.
-1.0
+0.3
N.D.
-0.4
auxotrophy
YNB Glucose
N.D.
-1.2
+0.0
N.D.
+0.2
facs on lipid accumulation
Sorted High BODIPY Gate
N.D.
-0.2
+0.1
N.D.
-0.5
facs on lipid accumulation
Sorted No BODIPY Gate
N.D.
-0.8
-0.1
N.D.
+0.2
growth on ricinoleic acid
YNB Methylricinoleic Acid
N.D.
-0.4
-0.2
N.D.
-0.0
growth on ypd
YPD
N.D.
-0.1
-0.4
N.D.
+0.0
auxotrophy
Dropout Complete
N.D.
-0.7
+0.1
N.D.
+0.1
growth on ricinoleic acid
YNB Ricinoleic Acid
N.D.
-0.6
+0.0
N.D.
+0.2
growth on oleic acid
YNB Glucose
N.D.
-0.6
+0.1
N.D.
+0.1
auxotrophy
YNB Glucose 75mM Methionine
N.D.
-0.7
+0.3
N.D.
+0.1
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
N.D.
-0.1
-0.4
N.D.
+0.3
ypd buoyancy
40 hrs Median Buoyancy
N.D.
-0.4
+0.2
N.D.
+0.1
buoyancy on lipid accumulation
40 hrs High Buoyancy
N.D.
+0.2
-0.4
N.D.
+0.1
ypd buoyancy
40 hrs High Buoyancy
N.D.
-0.6
+0.4
N.D.
+0.2
growth on oleic acid
YNB Oleic Acid
N.D.
-0.5
+0.1
N.D.
+0.6
ypd buoyancy
40 hrs Low Buoyancy
N.D.
-0.4
+0.3
N.D.
+0.6
buoyancy on lipid accumulation
40 hrs Low Buoyancy
N.D.
+0.0
-0.1
N.D.
+0.6
ypd buoyancy
40 hrs No Buoyancy Separation
N.D.
+0.9
-0.0
N.D.
-0.0
facs on lipid accumulation
Sorted Low BODIPY Gate
N.D.
+0.2
+0.3
N.D.
+0.4
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