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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
14868 and 14869 are separated by 238 nucleotides
14869 and 14870 are separated by 316 nucleotides
14870 and 14871 are separated by 640 nucleotides
14871 and 14872 are separated by 391 nucleotides
mRNA_6500: 14868 - K14416 HBS1 elongation factor 1 alpha-like protein, at 933,622 to 935,186
14868
mRNA_6501: 14869 - K06902 UMF1 MFS transporter, UMF1 family, at 935,425 to 937,523
14869
mRNA_6502: 14870 - K02971 RP-S21e, RPS21 small subunit ribosomal protein S21e, at 937,840 to 938,370
14870
mRNA_6503: 14871 - K11360 SPT8 transcriptional activator SPT8, at 939,011 to 940,996
14871
mRNA_6504: 14872 - Hypothetical Protein, at 941,388 to 943,563
14872
Group
Condition
mRNA
_6500
mRNA
_6501
mRNA
_6502
mRNA
_6503
mRNA
_6504
14868
14869
14870
14871
14872
growth on ricinoleic acid
YNB Glucose
-1.3
-0.0
N.D.
-0.3
+0.2
buoyancy on lipid accumulation
40 hrs Median Buoyancy
-0.9
-0.3
N.D.
+0.1
-0.0
auxotrophy
YNB Glucose
-1.2
+0.0
N.D.
+0.2
-0.1
auxotrophy
YNB Glucose 75mM Arginine
-1.0
+0.3
N.D.
-0.4
+0.0
facs on lipid accumulation
Sorted No BODIPY Gate
-0.8
-0.1
N.D.
+0.2
+0.0
growth on oleic acid
YNB Glucose
-0.6
+0.1
N.D.
+0.1
-0.1
facs on lipid accumulation
Sorted High BODIPY Gate
-0.2
+0.1
N.D.
-0.5
+0.1
growth on ricinoleic acid
YNB Methylricinoleic Acid
-0.4
-0.2
N.D.
-0.0
+0.1
growth on ricinoleic acid
YNB Ricinoleic Acid
-0.6
+0.0
N.D.
+0.2
-0.1
growth on ypd
YPD
-0.1
-0.4
N.D.
+0.0
-0.0
auxotrophy
Dropout Complete
-0.7
+0.1
N.D.
+0.1
-0.0
growth on oleic acid
YNB Oleic Acid
-0.5
+0.1
N.D.
+0.6
-0.4
auxotrophy
YNB Glucose 75mM Methionine
-0.7
+0.3
N.D.
+0.1
+0.2
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-0.1
-0.4
N.D.
+0.3
+0.2
ypd buoyancy
40 hrs Median Buoyancy
-0.4
+0.2
N.D.
+0.1
+0.2
ypd buoyancy
40 hrs High Buoyancy
-0.6
+0.4
N.D.
+0.2
+0.2
facs on lipid accumulation
Sorted Low BODIPY Gate
+0.2
+0.3
N.D.
+0.4
-0.7
buoyancy on lipid accumulation
40 hrs High Buoyancy
+0.2
-0.4
N.D.
+0.1
+0.3
ypd buoyancy
40 hrs Low Buoyancy
-0.4
+0.3
N.D.
+0.6
-0.1
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+0.0
-0.1
N.D.
+0.6
-0.1
ypd buoyancy
40 hrs No Buoyancy Separation
+0.9
-0.0
N.D.
-0.0
+0.3
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