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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
14872 and 14873 are separated by 429 nucleotides
14873 and 14874 are separated by 408 nucleotides
14874 and 14875 are separated by 333 nucleotides
14875 and 14876 are separated by 226 nucleotides
mRNA_6504: 14872 - Hypothetical Protein, at 941,388 to 943,563
14872
mRNA_6505: 14873 - Hypothetical Protein, at 943,993 to 944,857
14873
mRNA_6506: 14874 - KOG2712 Transcriptional coactivator, at 945,266 to 946,046
14874
mRNA_6507: 14875 - K09503 DNAJA2 DnaJ homolog subfamily A member 2, at 946,380 to 948,172
14875
mRNA_6508: 14876 - KOG2688 Transcription-associated recombination protein - Thp1p, at 948,399 to 950,118
14876
Group
Condition
mRNA
_6504
mRNA
_6505
mRNA
_6506
mRNA
_6507
mRNA
_6508
14872
14873
14874
14875
14876
facs on lipid accumulation
Sorted Low BODIPY Gate
-0.7
-0.2
-1.1
N.D.
N.D.
facs on lipid accumulation
Sorted High BODIPY Gate
+0.1
-0.2
-0.8
N.D.
N.D.
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
+0.2
-0.6
-0.5
N.D.
N.D.
buoyancy on lipid accumulation
40 hrs Median Buoyancy
-0.0
-0.2
-0.5
N.D.
N.D.
ypd buoyancy
40 hrs High Buoyancy
+0.2
-0.3
-0.2
N.D.
N.D.
ypd buoyancy
40 hrs No Buoyancy Separation
+0.3
-0.2
-0.4
N.D.
N.D.
facs on lipid accumulation
Sorted No BODIPY Gate
+0.0
+0.3
-0.6
N.D.
N.D.
growth on oleic acid
YNB Glucose
-0.1
+0.2
-0.3
N.D.
N.D.
growth on oleic acid
YNB Oleic Acid
-0.4
-0.1
+0.2
N.D.
N.D.
auxotrophy
YNB Glucose
-0.1
-0.0
-0.1
N.D.
N.D.
buoyancy on lipid accumulation
40 hrs High Buoyancy
+0.3
-0.4
-0.1
N.D.
N.D.
auxotrophy
Dropout Complete
-0.0
+0.2
-0.3
N.D.
N.D.
auxotrophy
YNB Glucose 75mM Arginine
+0.0
+0.0
-0.0
N.D.
N.D.
ypd buoyancy
40 hrs Median Buoyancy
+0.2
+0.1
-0.3
N.D.
N.D.
ypd buoyancy
40 hrs Low Buoyancy
-0.1
+0.1
+0.2
N.D.
N.D.
buoyancy on lipid accumulation
40 hrs Low Buoyancy
-0.1
-0.1
+0.4
N.D.
N.D.
growth on ypd
YPD
-0.0
-0.0
+0.4
N.D.
N.D.
auxotrophy
YNB Glucose 75mM Methionine
+0.2
+0.0
+0.3
N.D.
N.D.
growth on ricinoleic acid
YNB Glucose
+0.2
-0.2
+0.9
N.D.
N.D.
growth on ricinoleic acid
YNB Methylricinoleic Acid
+0.1
-0.0
+1.3
N.D.
N.D.
growth on ricinoleic acid
YNB Ricinoleic Acid
-0.1
-0.4
+1.8
N.D.
N.D.
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