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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
14878 and 14879 are separated by 142 nucleotides
14879 and 14880 are separated by 700 nucleotides
14880 and 14881 are separated by 1386 nucleotides
14881 and 14882 are separated by 968 nucleotides
mRNA_6510: 14878 - K00818 E2.6.1.11, argD acetylornithine aminotransferase, at 955,523 to 957,319
14878
mRNA_6511: 14879 - KOG1061 Vesicle coat complex AP-1/AP-2/AP-4, beta subunit, at 957,462 to 960,234
14879
mRNA_6512: 14880 - KOG1089 Myotubularin-related phosphatidylinositol 3-phosphate 3-phosphatase MTM6, at 960,935 to 963,520
14880
mRNA_6513: 14881 - HMMPfam-Glycosyl transferase family 90-PF05686,SMART-Putative lipopolysaccharide-modifying enzyme.-SM00672, at 964,907 to 967,353
14881
mRNA_6514: 14882 - KOG1441 Glucose-6-phosphate/phosphate and phosphoenolpyruvate/phosphate antiporter, at 968,322 to 969,938
14882
Group
Condition
mRNA
_6510
mRNA
_6511
mRNA
_6512
mRNA
_6513
mRNA
_6514
14878
14879
14880
14881
14882
facs on lipid accumulation
Sorted Low BODIPY Gate
-0.3
N.D.
+0.2
-1.4
-0.5
buoyancy on lipid accumulation
40 hrs Low Buoyancy
-1.0
N.D.
+0.0
-0.8
-0.1
facs on lipid accumulation
Sorted No BODIPY Gate
-0.7
N.D.
+0.1
-0.6
-0.0
growth on ricinoleic acid
YNB Glucose
-1.5
N.D.
-0.4
+0.8
-0.1
buoyancy on lipid accumulation
40 hrs Median Buoyancy
-0.7
N.D.
-0.2
+0.4
-0.6
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-0.7
N.D.
-0.1
+0.3
-0.4
auxotrophy
YNB Glucose 75mM Methionine
-1.1
N.D.
-0.6
+0.4
+0.4
auxotrophy
YNB Glucose
-1.5
N.D.
-0.4
+0.6
+0.4
facs on lipid accumulation
Sorted High BODIPY Gate
-1.0
N.D.
+0.3
+0.6
-0.7
growth on oleic acid
YNB Glucose
-1.1
N.D.
+0.1
+0.7
-0.5
ypd buoyancy
40 hrs No Buoyancy Separation
+0.2
N.D.
+0.2
-0.5
-0.4
ypd buoyancy
40 hrs High Buoyancy
+0.1
N.D.
-0.1
-0.4
-0.0
ypd buoyancy
40 hrs Median Buoyancy
+0.1
N.D.
-0.0
-0.5
+0.1
buoyancy on lipid accumulation
40 hrs High Buoyancy
+0.1
N.D.
-0.1
+0.7
-0.7
auxotrophy
YNB Glucose 75mM Arginine
+0.1
N.D.
-0.6
+0.4
+0.1
auxotrophy
Dropout Complete
-0.0
N.D.
-0.5
+1.0
+0.1
growth on ricinoleic acid
YNB Ricinoleic Acid
-0.4
N.D.
-0.4
+1.9
-0.1
growth on ypd
YPD
-0.3
N.D.
+0.2
+0.4
+0.7
growth on ricinoleic acid
YNB Methylricinoleic Acid
-0.1
N.D.
-0.5
+1.8
+0.0
ypd buoyancy
40 hrs Low Buoyancy
+0.3
N.D.
+0.2
+1.5
-0.1
growth on oleic acid
YNB Oleic Acid
+0.3
N.D.
+0.1
+1.3
+0.3
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