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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
14882 and 14883 are separated by 149 nucleotides
14883 and 14884 are separated by 344 nucleotides
14884 and 14885 are separated by 262 nucleotides
14885 and 14886 are separated by 123 nucleotides
mRNA_6514: 14882 - KOG1441 Glucose-6-phosphate/phosphate and phosphoenolpyruvate/phosphate antiporter, at 968,322 to 969,938
14882
mRNA_6515: 14883 - K16578 CLASP1_2 CLIP-associating protein 1/2, at 970,088 to 973,817
14883
mRNA_6516: 14884 - Hypothetical Protein, at 974,162 to 975,105
14884
mRNA_6517: 14885 - K12879 THOC2 THO complex subunit 2, at 975,368 to 982,291
14885
mRNA_6518: 14886 - K05712 mhpA 3-(3-hydroxy-phenyl)propionate hydroxylase, at 982,415 to 984,966
14886
Group
Condition
mRNA
_6514
mRNA
_6515
mRNA
_6516
mRNA
_6517
mRNA
_6518
14882
14883
14884
14885
14886
buoyancy on lipid accumulation
40 hrs High Buoyancy
-0.7
+0.2
-0.6
N.D.
-0.2
ypd buoyancy
40 hrs High Buoyancy
-0.0
-0.2
-0.6
N.D.
-0.2
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-0.4
+0.3
-0.9
N.D.
+0.0
facs on lipid accumulation
Sorted High BODIPY Gate
-0.7
-0.2
+0.6
N.D.
-0.3
growth on ypd
YPD
+0.7
+0.2
-1.6
N.D.
+0.1
facs on lipid accumulation
Sorted Low BODIPY Gate
-0.5
-0.3
+0.3
N.D.
-0.0
buoyancy on lipid accumulation
40 hrs Low Buoyancy
-0.1
+0.1
-0.2
N.D.
-0.2
growth on oleic acid
YNB Glucose
-0.5
+0.0
+0.1
N.D.
-0.1
buoyancy on lipid accumulation
40 hrs Median Buoyancy
-0.6
+0.2
+0.2
N.D.
-0.1
growth on ricinoleic acid
YNB Ricinoleic Acid
-0.1
+0.2
-0.1
N.D.
-0.1
ypd buoyancy
40 hrs Median Buoyancy
+0.1
-0.1
-0.0
N.D.
-0.0
facs on lipid accumulation
Sorted No BODIPY Gate
-0.0
-0.0
-0.1
N.D.
+0.2
auxotrophy
YNB Glucose 75mM Arginine
+0.1
+0.2
-0.3
N.D.
+0.2
ypd buoyancy
40 hrs No Buoyancy Separation
-0.4
-0.4
+1.1
N.D.
+0.1
growth on ricinoleic acid
YNB Methylricinoleic Acid
+0.0
+0.1
+0.3
N.D.
-0.0
growth on ricinoleic acid
YNB Glucose
-0.1
+0.3
+0.0
N.D.
+0.1
ypd buoyancy
40 hrs Low Buoyancy
-0.1
+0.1
+0.5
N.D.
-0.0
auxotrophy
YNB Glucose 75mM Methionine
+0.4
-0.0
+0.0
N.D.
+0.2
growth on oleic acid
YNB Oleic Acid
+0.3
+0.2
-0.0
N.D.
+0.1
auxotrophy
YNB Glucose
+0.4
+0.2
+0.0
N.D.
+0.1
auxotrophy
Dropout Complete
+0.1
+0.0
+0.2
N.D.
+0.4
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