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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
14887 and 14888 are separated by 272 nucleotides
14888 and 14889 are separated by 340 nucleotides
14889 and 14890 are separated by 252 nucleotides
14890 and 14891 are separated by 1364 nucleotides
mRNA_6519: 14887 - K11806 WDSOF1 WD repeat and SOF domain-containing protein 1, at 985,258 to 987,431
14887
mRNA_6520: 14888 - K06883 K06883 uncharacterized protein, at 987,704 to 989,005
14888
mRNA_6521: 14889 - K14788 NOL10, ENP2 ribosome biogenesis protein ENP2, at 989,346 to 992,026
14889
mRNA_6522: 14890 - K19871 SALL sal-like protein, at 992,279 to 994,205
14890
mRNA_6523: 14891 - K14567 UTP14 U3 small nucleolar RNA-associated protein 14, at 995,570 to 999,222
14891
Group
Condition
mRNA
_6519
mRNA
_6520
mRNA
_6521
mRNA
_6522
mRNA
_6523
14887
14888
14889
14890
14891
growth on ricinoleic acid
YNB Ricinoleic Acid
N.D.
N.D.
N.D.
-0.4
N.D.
ypd buoyancy
40 hrs No Buoyancy Separation
N.D.
N.D.
N.D.
-0.3
N.D.
buoyancy on lipid accumulation
40 hrs Median Buoyancy
N.D.
N.D.
N.D.
-0.3
N.D.
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
N.D.
N.D.
N.D.
-0.2
N.D.
auxotrophy
YNB Glucose 75mM Arginine
N.D.
N.D.
N.D.
-0.2
N.D.
growth on ricinoleic acid
YNB Methylricinoleic Acid
N.D.
N.D.
N.D.
-0.2
N.D.
auxotrophy
Dropout Complete
N.D.
N.D.
N.D.
-0.2
N.D.
auxotrophy
YNB Glucose
N.D.
N.D.
N.D.
-0.2
N.D.
auxotrophy
YNB Glucose 75mM Methionine
N.D.
N.D.
N.D.
-0.1
N.D.
buoyancy on lipid accumulation
40 hrs High Buoyancy
N.D.
N.D.
N.D.
-0.1
N.D.
growth on ricinoleic acid
YNB Glucose
N.D.
N.D.
N.D.
-0.1
N.D.
ypd buoyancy
40 hrs Median Buoyancy
N.D.
N.D.
N.D.
-0.0
N.D.
growth on oleic acid
YNB Oleic Acid
N.D.
N.D.
N.D.
-0.0
N.D.
facs on lipid accumulation
Sorted Low BODIPY Gate
N.D.
N.D.
N.D.
+0.1
N.D.
growth on ypd
YPD
N.D.
N.D.
N.D.
+0.1
N.D.
facs on lipid accumulation
Sorted High BODIPY Gate
N.D.
N.D.
N.D.
+0.1
N.D.
growth on oleic acid
YNB Glucose
N.D.
N.D.
N.D.
+0.1
N.D.
buoyancy on lipid accumulation
40 hrs Low Buoyancy
N.D.
N.D.
N.D.
+0.2
N.D.
ypd buoyancy
40 hrs Low Buoyancy
N.D.
N.D.
N.D.
+0.2
N.D.
facs on lipid accumulation
Sorted No BODIPY Gate
N.D.
N.D.
N.D.
+0.2
N.D.
ypd buoyancy
40 hrs High Buoyancy
N.D.
N.D.
N.D.
+0.3
N.D.
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