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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
14894 and 14895 are separated by 214 nucleotides
14895 and 14896 are separated by 198 nucleotides
14896 and 14897 are separated by 297 nucleotides
14897 and 14898 are separated by 1115 nucleotides
mRNA_6526: 14894 - KOG2929 Transcription factor, component of CCR4 transcriptional complex, at 1,004,889 to 1,006,380
14894
mRNA_6527: 14895 - K18178 COA5, PET191 cytochrome c oxidase assembly factor 5, at 1,006,595 to 1,007,064
14895
mRNA_6528: 14896 - K01514 PRUNE, PPX1 exopolyphosphatase, at 1,007,263 to 1,008,621
14896
mRNA_6529: 14897 - K03626 EGD2, NACA nascent polypeptide-associated complex subunit alpha, at 1,008,919 to 1,009,693
14897
mRNA_6530: 14898 - K03809 wrbA NAD(P)H dehydrogenase (quinone), at 1,010,809 to 1,011,597
14898
Group
Condition
mRNA
_6526
mRNA
_6527
mRNA
_6528
mRNA
_6529
mRNA
_6530
14894
14895
14896
14897
14898
facs on lipid accumulation
Sorted High BODIPY Gate
N.D.
N.D.
-1.9
-0.7
-0.4
growth on oleic acid
YNB Glucose
N.D.
N.D.
-1.4
+0.1
-0.3
ypd buoyancy
40 hrs No Buoyancy Separation
N.D.
N.D.
-0.3
+0.2
-0.8
facs on lipid accumulation
Sorted No BODIPY Gate
N.D.
N.D.
-1.2
-0.5
+0.8
growth on ypd
YPD
N.D.
N.D.
-1.2
+0.1
+0.3
growth on ricinoleic acid
YNB Ricinoleic Acid
N.D.
N.D.
-1.5
+0.3
+0.4
ypd buoyancy
40 hrs High Buoyancy
N.D.
N.D.
-0.3
-0.1
-0.3
auxotrophy
Dropout Complete
N.D.
N.D.
-0.9
+0.6
-0.2
growth on ricinoleic acid
YNB Glucose
N.D.
N.D.
-0.7
-0.4
+0.6
auxotrophy
YNB Glucose 75mM Methionine
N.D.
N.D.
-0.6
+0.8
-0.4
growth on ricinoleic acid
YNB Methylricinoleic Acid
N.D.
N.D.
-0.9
+0.0
+0.6
auxotrophy
YNB Glucose 75mM Arginine
N.D.
N.D.
-0.6
+0.6
-0.1
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
N.D.
N.D.
-0.1
+0.1
-0.0
auxotrophy
YNB Glucose
N.D.
N.D.
-0.2
+0.5
-0.2
buoyancy on lipid accumulation
40 hrs High Buoyancy
N.D.
N.D.
-0.3
-0.0
+0.4
ypd buoyancy
40 hrs Median Buoyancy
N.D.
N.D.
+0.2
+0.1
-0.1
facs on lipid accumulation
Sorted Low BODIPY Gate
N.D.
N.D.
+1.2
-1.0
+0.1
buoyancy on lipid accumulation
40 hrs Median Buoyancy
N.D.
N.D.
+0.1
+0.1
+0.3
ypd buoyancy
40 hrs Low Buoyancy
N.D.
N.D.
+0.5
+0.3
-0.3
growth on oleic acid
YNB Oleic Acid
N.D.
N.D.
-0.2
+0.8
-0.1
buoyancy on lipid accumulation
40 hrs Low Buoyancy
N.D.
N.D.
+1.0
-0.3
+0.9
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