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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
14897 and 14898 are separated by 1115 nucleotides
14898 and 14899 are separated by 379 nucleotides
14899 and 14900 are separated by 574 nucleotides
14900 and 14901 are separated by 522 nucleotides
mRNA_6529: 14897 - K03626 EGD2, NACA nascent polypeptide-associated complex subunit alpha, at 1,008,919 to 1,009,693
14897
mRNA_6530: 14898 - K03809 wrbA NAD(P)H dehydrogenase (quinone), at 1,010,809 to 1,011,597
14898
mRNA_6531: 14899 - K19940 SEC2 Rab guanine nucleotide exchange factor SEC2, at 1,011,977 to 1,014,833
14899
mRNA_6532: 14900 - K11352 NDUFA12 NADH dehydrogenase (ubiquinone) 1 alpha subcomplex subunit 12, at 1,015,408 to 1,016,084
14900
mRNA_6533: 14901 - Hypothetical Protein, at 1,016,607 to 1,018,087
14901
Group
Condition
mRNA
_6529
mRNA
_6530
mRNA
_6531
mRNA
_6532
mRNA
_6533
14897
14898
14899
14900
14901
facs on lipid accumulation
Sorted High BODIPY Gate
-0.7
-0.4
-1.5
+0.0
-0.2
facs on lipid accumulation
Sorted Low BODIPY Gate
-1.0
+0.1
-0.6
-0.4
-0.7
ypd buoyancy
40 hrs No Buoyancy Separation
+0.2
-0.8
-0.4
-1.1
+0.4
growth on ricinoleic acid
YNB Methylricinoleic Acid
+0.0
+0.6
-0.7
-2.2
+0.5
growth on ricinoleic acid
YNB Ricinoleic Acid
+0.3
+0.4
-1.2
-1.7
+0.8
facs on lipid accumulation
Sorted No BODIPY Gate
-0.5
+0.8
-1.5
+0.4
-0.5
growth on oleic acid
YNB Oleic Acid
+0.8
-0.1
-0.2
-1.2
+0.3
growth on ricinoleic acid
YNB Glucose
-0.4
+0.6
-0.0
-0.3
-0.1
growth on oleic acid
YNB Glucose
+0.1
-0.3
+0.0
-0.1
+0.3
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
+0.1
-0.0
-0.4
+0.4
+0.0
auxotrophy
YNB Glucose 75mM Arginine
+0.6
-0.1
+0.2
+0.1
-0.6
auxotrophy
YNB Glucose
+0.5
-0.2
+0.1
-0.0
-0.0
auxotrophy
YNB Glucose 75mM Methionine
+0.8
-0.4
-0.4
+0.3
+0.2
auxotrophy
Dropout Complete
+0.6
-0.2
+0.6
-0.2
-0.2
ypd buoyancy
40 hrs Low Buoyancy
+0.3
-0.3
+0.2
-0.4
+0.7
ypd buoyancy
40 hrs High Buoyancy
-0.1
-0.3
-0.3
+0.3
+1.2
ypd buoyancy
40 hrs Median Buoyancy
+0.1
-0.1
+0.0
+0.5
+0.4
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+0.1
+0.3
-0.4
+0.6
+0.8
buoyancy on lipid accumulation
40 hrs Low Buoyancy
-0.3
+0.9
+0.3
+1.3
+0.3
buoyancy on lipid accumulation
40 hrs High Buoyancy
-0.0
+0.4
-0.4
+1.0
+1.6
growth on ypd
YPD
+0.1
+0.3
+0.1
+0.4
+2.2
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