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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
14898 and 14899 are separated by 379 nucleotides
14899 and 14900 are separated by 574 nucleotides
14900 and 14901 are separated by 522 nucleotides
14901 and 14902 are separated by 685 nucleotides
mRNA_6530: 14898 - K03809 wrbA NAD(P)H dehydrogenase (quinone), at 1,010,809 to 1,011,597
14898
mRNA_6531: 14899 - K19940 SEC2 Rab guanine nucleotide exchange factor SEC2, at 1,011,977 to 1,014,833
14899
mRNA_6532: 14900 - K11352 NDUFA12 NADH dehydrogenase (ubiquinone) 1 alpha subcomplex subunit 12, at 1,015,408 to 1,016,084
14900
mRNA_6533: 14901 - Hypothetical Protein, at 1,016,607 to 1,018,087
14901
mRNA_6534: 14902 - HMMPfam-Opy2 protein-PF09463, at 1,018,773 to 1,021,328
14902
Group
Condition
mRNA
_6530
mRNA
_6531
mRNA
_6532
mRNA
_6533
mRNA
_6534
14898
14899
14900
14901
14902
growth on ricinoleic acid
YNB Ricinoleic Acid
+0.4
-1.2
-1.7
+0.8
-3.2
growth on ricinoleic acid
YNB Methylricinoleic Acid
+0.6
-0.7
-2.2
+0.5
-2.3
facs on lipid accumulation
Sorted Low BODIPY Gate
+0.1
-0.6
-0.4
-0.7
-1.0
facs on lipid accumulation
Sorted High BODIPY Gate
-0.4
-1.5
+0.0
-0.2
-0.6
facs on lipid accumulation
Sorted No BODIPY Gate
+0.8
-1.5
+0.4
-0.5
-0.9
growth on oleic acid
YNB Oleic Acid
-0.1
-0.2
-1.2
+0.3
+0.1
auxotrophy
YNB Glucose 75mM Methionine
-0.4
-0.4
+0.3
+0.2
-0.6
auxotrophy
YNB Glucose 75mM Arginine
-0.1
+0.2
+0.1
-0.6
-0.6
ypd buoyancy
40 hrs No Buoyancy Separation
-0.8
-0.4
-1.1
+0.4
+1.1
auxotrophy
YNB Glucose
-0.2
+0.1
-0.0
-0.0
-0.3
growth on ricinoleic acid
YNB Glucose
+0.6
-0.0
-0.3
-0.1
-0.5
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-0.0
-0.4
+0.4
+0.0
+0.1
growth on oleic acid
YNB Glucose
-0.3
+0.0
-0.1
+0.3
+0.2
ypd buoyancy
40 hrs Low Buoyancy
-0.3
+0.2
-0.4
+0.7
+0.2
ypd buoyancy
40 hrs High Buoyancy
-0.3
-0.3
+0.3
+1.2
-0.2
auxotrophy
Dropout Complete
-0.2
+0.6
-0.2
-0.2
+0.8
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+0.3
-0.4
+0.6
+0.8
-0.4
ypd buoyancy
40 hrs Median Buoyancy
-0.1
+0.0
+0.5
+0.4
+0.3
buoyancy on lipid accumulation
40 hrs High Buoyancy
+0.4
-0.4
+1.0
+1.6
-0.9
growth on ypd
YPD
+0.3
+0.1
+0.4
+2.2
-0.9
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+0.9
+0.3
+1.3
+0.3
-0.7
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