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Protein
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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
14900 and 14901 are separated by 522 nucleotides
14901 and 14902 are separated by 685 nucleotides
14902 and 14903 are separated by 1142 nucleotides
14903 and 14904 are separated by 393 nucleotides
mRNA_6532: 14900 - K11352 NDUFA12 NADH dehydrogenase (ubiquinone) 1 alpha subcomplex subunit 12, at 1,015,408 to 1,016,084
14900
mRNA_6533: 14901 - Hypothetical Protein, at 1,016,607 to 1,018,087
14901
mRNA_6534: 14902 - HMMPfam-Opy2 protein-PF09463, at 1,018,773 to 1,021,328
14902
mRNA_6535: 14903 - KOG0715 Molecular chaperone (DnaJ superfamily), at 1,022,471 to 1,023,493
14903
mRNA_6536: 14904 - HMMPfam-Protein of unknown function (DUF837)-PF05769, at 1,023,887 to 1,025,304
14904
Group
Condition
mRNA
_6532
mRNA
_6533
mRNA
_6534
mRNA
_6535
mRNA
_6536
14900
14901
14902
14903
14904
growth on ricinoleic acid
YNB Methylricinoleic Acid
-2.2
+0.5
-2.3
+0.1
+1.4
growth on ricinoleic acid
YNB Ricinoleic Acid
-1.7
+0.8
-3.2
+0.1
+1.6
facs on lipid accumulation
Sorted Low BODIPY Gate
-0.4
-0.7
-1.0
+0.2
-0.2
facs on lipid accumulation
Sorted High BODIPY Gate
+0.0
-0.2
-0.6
+0.2
-0.8
facs on lipid accumulation
Sorted No BODIPY Gate
+0.4
-0.5
-0.9
+0.4
-0.2
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
+0.4
+0.0
+0.1
-0.9
+0.2
auxotrophy
YNB Glucose 75mM Arginine
+0.1
-0.6
-0.6
+0.2
+0.9
growth on oleic acid
YNB Oleic Acid
-1.2
+0.3
+0.1
-0.1
+1.1
growth on ricinoleic acid
YNB Glucose
-0.3
-0.1
-0.5
+0.3
+0.8
ypd buoyancy
40 hrs No Buoyancy Separation
-1.1
+0.4
+1.1
-0.0
-0.1
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+0.6
+0.8
-0.4
-0.4
-0.1
auxotrophy
YNB Glucose
-0.0
-0.0
-0.3
-0.1
+0.9
buoyancy on lipid accumulation
40 hrs High Buoyancy
+1.0
+1.6
-0.9
-0.9
-0.2
auxotrophy
YNB Glucose 75mM Methionine
+0.3
+0.2
-0.6
+0.4
+0.8
ypd buoyancy
40 hrs High Buoyancy
+0.3
+1.2
-0.2
+0.0
-0.3
auxotrophy
Dropout Complete
-0.2
-0.2
+0.8
-0.1
+1.0
ypd buoyancy
40 hrs Low Buoyancy
-0.4
+0.7
+0.2
+0.5
+0.2
growth on oleic acid
YNB Glucose
-0.1
+0.3
+0.2
+0.1
+0.8
ypd buoyancy
40 hrs Median Buoyancy
+0.5
+0.4
+0.3
+0.3
+0.0
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+1.3
+0.3
-0.7
+0.0
+0.8
growth on ypd
YPD
+0.4
+2.2
-0.9
+0.2
+0.3
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