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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
14902 and 14903 are separated by 1142 nucleotides
14903 and 14904 are separated by 393 nucleotides
14904 and 14905 are separated by 191 nucleotides
14905 and 14906 are separated by 329 nucleotides
mRNA_6534: 14902 - HMMPfam-Opy2 protein-PF09463, at 1,018,773 to 1,021,328
14902
mRNA_6535: 14903 - KOG0715 Molecular chaperone (DnaJ superfamily), at 1,022,471 to 1,023,493
14903
mRNA_6536: 14904 - HMMPfam-Protein of unknown function (DUF837)-PF05769, at 1,023,887 to 1,025,304
14904
mRNA_6537: 14905 - Hypothetical Protein, at 1,025,496 to 1,027,566
14905
mRNA_6538: 14906 - BLAST AGC/AKT protein kinase [Microbotryum lychnidis-dioica..., at 1,027,896 to 1,028,222
14906
Group
Condition
mRNA
_6534
mRNA
_6535
mRNA
_6536
mRNA
_6537
mRNA
_6538
14902
14903
14904
14905
14906
facs on lipid accumulation
Sorted High BODIPY Gate
-0.6
+0.2
-0.8
-0.3
-2.3
buoyancy on lipid accumulation
40 hrs High Buoyancy
-0.9
-0.9
-0.2
-0.2
-0.2
facs on lipid accumulation
Sorted No BODIPY Gate
-0.9
+0.4
-0.2
-0.1
-1.1
facs on lipid accumulation
Sorted Low BODIPY Gate
-1.0
+0.2
-0.2
+0.1
-0.5
buoyancy on lipid accumulation
40 hrs Median Buoyancy
-0.4
-0.4
-0.1
-0.2
-0.1
growth on ypd
YPD
-0.9
+0.2
+0.3
+0.4
-0.3
growth on ricinoleic acid
YNB Ricinoleic Acid
-3.2
+0.1
+1.6
-0.1
+1.2
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
+0.1
-0.9
+0.2
+0.0
+0.3
ypd buoyancy
40 hrs High Buoyancy
-0.2
+0.0
-0.3
+0.1
+0.2
growth on ricinoleic acid
YNB Methylricinoleic Acid
-2.3
+0.1
+1.4
+0.1
+0.6
buoyancy on lipid accumulation
40 hrs Low Buoyancy
-0.7
+0.0
+0.8
+0.1
+0.0
ypd buoyancy
40 hrs Median Buoyancy
+0.3
+0.3
+0.0
-0.2
+0.3
ypd buoyancy
40 hrs No Buoyancy Separation
+1.1
-0.0
-0.1
-0.4
+0.1
auxotrophy
YNB Glucose
-0.3
-0.1
+0.9
-0.0
+0.5
auxotrophy
YNB Glucose 75mM Methionine
-0.6
+0.4
+0.8
-0.1
+0.5
growth on ricinoleic acid
YNB Glucose
-0.5
+0.3
+0.8
+0.1
+0.4
auxotrophy
YNB Glucose 75mM Arginine
-0.6
+0.2
+0.9
-0.0
+0.6
ypd buoyancy
40 hrs Low Buoyancy
+0.2
+0.5
+0.2
-0.1
+0.2
growth on oleic acid
YNB Glucose
+0.2
+0.1
+0.8
-0.2
+0.5
growth on oleic acid
YNB Oleic Acid
+0.1
-0.1
+1.1
+0.0
+0.9
auxotrophy
Dropout Complete
+0.8
-0.1
+1.0
-0.1
+0.6
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