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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
14903 and 14904 are separated by 393 nucleotides
14904 and 14905 are separated by 191 nucleotides
14905 and 14906 are separated by 329 nucleotides
14906 and 14907 are separated by 316 nucleotides
mRNA_6535: 14903 - KOG0715 Molecular chaperone (DnaJ superfamily), at 1,022,471 to 1,023,493
14903
mRNA_6536: 14904 - HMMPfam-Protein of unknown function (DUF837)-PF05769, at 1,023,887 to 1,025,304
14904
mRNA_6537: 14905 - Hypothetical Protein, at 1,025,496 to 1,027,566
14905
mRNA_6538: 14906 - BLAST AGC/AKT protein kinase [Microbotryum lychnidis-dioica..., at 1,027,896 to 1,028,222
14906
mRNA_6539: 14907 - K19800 SCH9 serine/threonine protein kinase SCH9, at 1,028,539 to 1,031,379
14907
Group
Condition
mRNA
_6535
mRNA
_6536
mRNA
_6537
mRNA
_6538
mRNA
_6539
14903
14904
14905
14906
14907
facs on lipid accumulation
Sorted High BODIPY Gate
+0.2
-0.8
-0.3
-2.3
-3.3
facs on lipid accumulation
Sorted No BODIPY Gate
+0.4
-0.2
-0.1
-1.1
-2.7
buoyancy on lipid accumulation
40 hrs High Buoyancy
-0.9
-0.2
-0.2
-0.2
-0.6
buoyancy on lipid accumulation
40 hrs Median Buoyancy
-0.4
-0.1
-0.2
-0.1
-0.9
facs on lipid accumulation
Sorted Low BODIPY Gate
+0.2
-0.2
+0.1
-0.5
-1.3
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-0.9
+0.2
+0.0
+0.3
-0.2
ypd buoyancy
40 hrs No Buoyancy Separation
-0.0
-0.1
-0.4
+0.1
-0.1
ypd buoyancy
40 hrs High Buoyancy
+0.0
-0.3
+0.1
+0.2
-0.0
ypd buoyancy
40 hrs Median Buoyancy
+0.3
+0.0
-0.2
+0.3
-0.0
growth on ypd
YPD
+0.2
+0.3
+0.4
-0.3
-0.1
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+0.0
+0.8
+0.1
+0.0
+0.0
ypd buoyancy
40 hrs Low Buoyancy
+0.5
+0.2
-0.1
+0.2
+0.1
growth on oleic acid
YNB Glucose
+0.1
+0.8
-0.2
+0.5
+0.5
auxotrophy
YNB Glucose
-0.1
+0.9
-0.0
+0.5
+0.9
auxotrophy
Dropout Complete
-0.1
+1.0
-0.1
+0.6
+0.9
auxotrophy
YNB Glucose 75mM Methionine
+0.4
+0.8
-0.1
+0.5
+0.7
auxotrophy
YNB Glucose 75mM Arginine
+0.2
+0.9
-0.0
+0.6
+0.7
growth on oleic acid
YNB Oleic Acid
-0.1
+1.1
+0.0
+0.9
+0.6
growth on ricinoleic acid
YNB Glucose
+0.3
+0.8
+0.1
+0.4
+1.6
growth on ricinoleic acid
YNB Methylricinoleic Acid
+0.1
+1.4
+0.1
+0.6
+1.5
growth on ricinoleic acid
YNB Ricinoleic Acid
+0.1
+1.6
-0.1
+1.2
+1.9
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