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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
14904 and 14905 are separated by 191 nucleotides
14905 and 14906 are separated by 329 nucleotides
14906 and 14907 are separated by 316 nucleotides
14907 and 14908 are separated by 586 nucleotides
mRNA_6536: 14904 - HMMPfam-Protein of unknown function (DUF837)-PF05769, at 1,023,887 to 1,025,304
14904
mRNA_6537: 14905 - Hypothetical Protein, at 1,025,496 to 1,027,566
14905
mRNA_6538: 14906 - BLAST AGC/AKT protein kinase [Microbotryum lychnidis-dioica..., at 1,027,896 to 1,028,222
14906
mRNA_6539: 14907 - K19800 SCH9 serine/threonine protein kinase SCH9, at 1,028,539 to 1,031,379
14907
mRNA_6540: 14908 - K00838 ARO8 aromatic amino acid aminotransferase I, at 1,031,966 to 1,033,668
14908
Group
Condition
mRNA
_6536
mRNA
_6537
mRNA
_6538
mRNA
_6539
mRNA
_6540
14904
14905
14906
14907
14908
facs on lipid accumulation
Sorted High BODIPY Gate
-0.8
-0.3
-2.3
-3.3
-0.2
facs on lipid accumulation
Sorted No BODIPY Gate
-0.2
-0.1
-1.1
-2.7
-0.1
facs on lipid accumulation
Sorted Low BODIPY Gate
-0.2
+0.1
-0.5
-1.3
-0.0
buoyancy on lipid accumulation
40 hrs High Buoyancy
-0.2
-0.2
-0.2
-0.6
-0.1
buoyancy on lipid accumulation
40 hrs Median Buoyancy
-0.1
-0.2
-0.1
-0.9
-0.1
ypd buoyancy
40 hrs High Buoyancy
-0.3
+0.1
+0.2
-0.0
+0.0
growth on ypd
YPD
+0.3
+0.4
-0.3
-0.1
-0.1
ypd buoyancy
40 hrs No Buoyancy Separation
-0.1
-0.4
+0.1
-0.1
+0.6
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
+0.2
+0.0
+0.3
-0.2
+0.1
ypd buoyancy
40 hrs Median Buoyancy
+0.0
-0.2
+0.3
-0.0
+0.4
ypd buoyancy
40 hrs Low Buoyancy
+0.2
-0.1
+0.2
+0.1
+0.3
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+0.8
+0.1
+0.0
+0.0
+0.2
growth on oleic acid
YNB Glucose
+0.8
-0.2
+0.5
+0.5
-0.2
auxotrophy
YNB Glucose 75mM Methionine
+0.8
-0.1
+0.5
+0.7
+0.1
auxotrophy
YNB Glucose 75mM Arginine
+0.9
-0.0
+0.6
+0.7
+0.0
growth on oleic acid
YNB Oleic Acid
+1.1
+0.0
+0.9
+0.6
-0.3
auxotrophy
YNB Glucose
+0.9
-0.0
+0.5
+0.9
+0.3
auxotrophy
Dropout Complete
+1.0
-0.1
+0.6
+0.9
+0.4
growth on ricinoleic acid
YNB Glucose
+0.8
+0.1
+0.4
+1.6
+0.1
growth on ricinoleic acid
YNB Methylricinoleic Acid
+1.4
+0.1
+0.6
+1.5
+0.2
growth on ricinoleic acid
YNB Ricinoleic Acid
+1.6
-0.1
+1.2
+1.9
+0.2
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