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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
14905 and 14906 are separated by 329 nucleotides
14906 and 14907 are separated by 316 nucleotides
14907 and 14908 are separated by 586 nucleotides
14908 and 14909 are separated by 807 nucleotides
mRNA_6537: 14905 - Hypothetical Protein, at 1,025,496 to 1,027,566
14905
mRNA_6538: 14906 - BLAST AGC/AKT protein kinase [Microbotryum lychnidis-dioica..., at 1,027,896 to 1,028,222
14906
mRNA_6539: 14907 - K19800 SCH9 serine/threonine protein kinase SCH9, at 1,028,539 to 1,031,379
14907
mRNA_6540: 14908 - K00838 ARO8 aromatic amino acid aminotransferase I, at 1,031,966 to 1,033,668
14908
mRNA_6541: 14909 - K14819 DUSP12, YVH1 dual specificity phosphatase 12, at 1,034,476 to 1,036,379
14909
Group
Condition
mRNA
_6537
mRNA
_6538
mRNA
_6539
mRNA
_6540
mRNA
_6541
14905
14906
14907
14908
14909
facs on lipid accumulation
Sorted High BODIPY Gate
-0.3
-2.3
-3.3
-0.2
N.D.
facs on lipid accumulation
Sorted No BODIPY Gate
-0.1
-1.1
-2.7
-0.1
N.D.
facs on lipid accumulation
Sorted Low BODIPY Gate
+0.1
-0.5
-1.3
-0.0
N.D.
buoyancy on lipid accumulation
40 hrs Median Buoyancy
-0.2
-0.1
-0.9
-0.1
N.D.
buoyancy on lipid accumulation
40 hrs High Buoyancy
-0.2
-0.2
-0.6
-0.1
N.D.
growth on ypd
YPD
+0.4
-0.3
-0.1
-0.1
N.D.
ypd buoyancy
40 hrs High Buoyancy
+0.1
+0.2
-0.0
+0.0
N.D.
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
+0.0
+0.3
-0.2
+0.1
N.D.
ypd buoyancy
40 hrs No Buoyancy Separation
-0.4
+0.1
-0.1
+0.6
N.D.
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+0.1
+0.0
+0.0
+0.2
N.D.
ypd buoyancy
40 hrs Low Buoyancy
-0.1
+0.2
+0.1
+0.3
N.D.
ypd buoyancy
40 hrs Median Buoyancy
-0.2
+0.3
-0.0
+0.4
N.D.
growth on oleic acid
YNB Glucose
-0.2
+0.5
+0.5
-0.2
N.D.
growth on oleic acid
YNB Oleic Acid
+0.0
+0.9
+0.6
-0.3
N.D.
auxotrophy
YNB Glucose 75mM Methionine
-0.1
+0.5
+0.7
+0.1
N.D.
auxotrophy
YNB Glucose 75mM Arginine
-0.0
+0.6
+0.7
+0.0
N.D.
auxotrophy
YNB Glucose
-0.0
+0.5
+0.9
+0.3
N.D.
auxotrophy
Dropout Complete
-0.1
+0.6
+0.9
+0.4
N.D.
growth on ricinoleic acid
YNB Glucose
+0.1
+0.4
+1.6
+0.1
N.D.
growth on ricinoleic acid
YNB Methylricinoleic Acid
+0.1
+0.6
+1.5
+0.2
N.D.
growth on ricinoleic acid
YNB Ricinoleic Acid
-0.1
+1.2
+1.9
+0.2
N.D.
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