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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
14907 and 14908 are separated by 586 nucleotides
14908 and 14909 are separated by 807 nucleotides
14909 and 14910 are separated by 332 nucleotides
14910 and 14911 are separated by 421 nucleotides
mRNA_6539: 14907 - K19800 SCH9 serine/threonine protein kinase SCH9, at 1,028,539 to 1,031,379
14907
mRNA_6540: 14908 - K00838 ARO8 aromatic amino acid aminotransferase I, at 1,031,966 to 1,033,668
14908
mRNA_6541: 14909 - K14819 DUSP12, YVH1 dual specificity phosphatase 12, at 1,034,476 to 1,036,379
14909
mRNA_6542: 14910 - BLAST WSC domain containing protein [Zymoseptoria brevis], at 1,036,712 to 1,039,171
14910
mRNA_6543: 14911 - K08712 ABCG2.SNQ2 ATP-binding cassette, subfamily G (WHITE), member 2, SNQ2, at 1,039,593 to 1,046,261
14911
Group
Condition
mRNA
_6539
mRNA
_6540
mRNA
_6541
mRNA
_6542
mRNA
_6543
14907
14908
14909
14910
14911
facs on lipid accumulation
Sorted Low BODIPY Gate
-1.3
-0.0
N.D.
-0.5
-2.3
facs on lipid accumulation
Sorted High BODIPY Gate
-3.3
-0.2
N.D.
-0.0
+0.5
facs on lipid accumulation
Sorted No BODIPY Gate
-2.7
-0.1
N.D.
+0.2
+0.2
ypd buoyancy
40 hrs No Buoyancy Separation
-0.1
+0.6
N.D.
-0.7
-0.4
buoyancy on lipid accumulation
40 hrs Median Buoyancy
-0.9
-0.1
N.D.
+0.2
+0.4
buoyancy on lipid accumulation
40 hrs High Buoyancy
-0.6
-0.1
N.D.
+0.0
+0.3
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-0.2
+0.1
N.D.
-0.2
+0.1
growth on ypd
YPD
-0.1
-0.1
N.D.
-0.1
+0.2
ypd buoyancy
40 hrs Median Buoyancy
-0.0
+0.4
N.D.
-0.1
-0.2
ypd buoyancy
40 hrs Low Buoyancy
+0.1
+0.3
N.D.
-0.2
-0.0
ypd buoyancy
40 hrs High Buoyancy
-0.0
+0.0
N.D.
+0.3
-0.0
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+0.0
+0.2
N.D.
-0.0
+0.1
growth on oleic acid
YNB Glucose
+0.5
-0.2
N.D.
+0.0
-0.1
growth on oleic acid
YNB Oleic Acid
+0.6
-0.3
N.D.
+0.2
-0.1
growth on ricinoleic acid
YNB Methylricinoleic Acid
+1.5
+0.2
N.D.
+0.2
-1.3
auxotrophy
YNB Glucose 75mM Arginine
+0.7
+0.0
N.D.
+0.0
-0.0
auxotrophy
YNB Glucose 75mM Methionine
+0.7
+0.1
N.D.
+0.0
+0.1
auxotrophy
YNB Glucose
+0.9
+0.3
N.D.
+0.0
+0.0
auxotrophy
Dropout Complete
+0.9
+0.4
N.D.
+0.1
+0.0
growth on ricinoleic acid
YNB Ricinoleic Acid
+1.9
+0.2
N.D.
-0.1
-0.1
growth on ricinoleic acid
YNB Glucose
+1.6
+0.1
N.D.
+0.0
+0.3
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