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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
14914 and 14915 are separated by 164 nucleotides
14915 and 14916 are separated by 800 nucleotides
14916 and 14917 are separated by 994 nucleotides
14917 and 14918 are separated by 69 nucleotides
mRNA_6546: 14914 - K01702 LEU1 3-isopropylmalate dehydratase, at 1,050,588 to 1,053,356
14914
mRNA_6547: 14915 - KOG3040 Predicted sugar phosphatase (HAD superfamily), at 1,053,521 to 1,054,436
14915
mRNA_6548: 14916 - K11592 DICER1, DCR1 endoribonuclease Dicer, at 1,055,237 to 1,061,964
14916
mRNA_6549: 14917 - KOG0605 NDR and related serine/threonine kinases, at 1,062,959 to 1,066,157
14917
mRNA_6550: 14918 - K11374 ELP2 elongator complex protein 2, at 1,066,227 to 1,069,568
14918
Group
Condition
mRNA
_6546
mRNA
_6547
mRNA
_6548
mRNA
_6549
mRNA
_6550
14914
14915
14916
14917
14918
ypd buoyancy
40 hrs Low Buoyancy
N.D.
N.D.
+0.1
-0.1
-2.4
facs on lipid accumulation
Sorted High BODIPY Gate
N.D.
N.D.
-0.1
-0.2
-1.0
buoyancy on lipid accumulation
40 hrs Low Buoyancy
N.D.
N.D.
+0.1
-0.1
-1.1
facs on lipid accumulation
Sorted No BODIPY Gate
N.D.
N.D.
-0.1
-0.0
-1.0
growth on ypd
YPD
N.D.
N.D.
+0.0
-0.2
-0.4
buoyancy on lipid accumulation
40 hrs High Buoyancy
N.D.
N.D.
-0.0
-0.1
-0.4
ypd buoyancy
40 hrs Median Buoyancy
N.D.
N.D.
+0.1
-0.1
-0.2
auxotrophy
YNB Glucose
N.D.
N.D.
+0.1
-0.2
+0.0
growth on oleic acid
YNB Glucose
N.D.
N.D.
-0.3
-0.2
+0.4
auxotrophy
YNB Glucose 75mM Methionine
N.D.
N.D.
+0.2
-0.2
-0.0
buoyancy on lipid accumulation
40 hrs Median Buoyancy
N.D.
N.D.
-0.0
-0.1
+0.1
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
N.D.
N.D.
-0.0
+0.0
+0.0
ypd buoyancy
40 hrs No Buoyancy Separation
N.D.
N.D.
+0.0
-0.3
+0.3
auxotrophy
YNB Glucose 75mM Arginine
N.D.
N.D.
+0.1
-0.2
+0.2
auxotrophy
Dropout Complete
N.D.
N.D.
+0.2
-0.2
+0.2
facs on lipid accumulation
Sorted Low BODIPY Gate
N.D.
N.D.
+0.1
-0.0
+0.2
growth on ricinoleic acid
YNB Glucose
N.D.
N.D.
+0.1
-0.1
+0.4
growth on oleic acid
YNB Oleic Acid
N.D.
N.D.
-0.0
-0.1
+0.6
growth on ricinoleic acid
YNB Methylricinoleic Acid
N.D.
N.D.
+0.1
-0.3
+0.7
ypd buoyancy
40 hrs High Buoyancy
N.D.
N.D.
+0.1
-0.3
+0.8
growth on ricinoleic acid
YNB Ricinoleic Acid
N.D.
N.D.
-0.0
-0.2
+1.0
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