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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
14916 and 14917 are separated by 994 nucleotides
14917 and 14918 are separated by 69 nucleotides
14918 and 14919 are separated by 4372 nucleotides
14919 and 14920 are separated by 440 nucleotides
mRNA_6548: 14916 - K11592 DICER1, DCR1 endoribonuclease Dicer, at 1,055,237 to 1,061,964
14916
mRNA_6549: 14917 - KOG0605 NDR and related serine/threonine kinases, at 1,062,959 to 1,066,157
14917
mRNA_6550: 14918 - K11374 ELP2 elongator complex protein 2, at 1,066,227 to 1,069,568
14918
mRNA_6551: 14919 - ProSiteProfiles-Zinc finger CCHC-type profile.-PS50158,SMART-zinc finger-SM00343,SUPERFAMILY--SSF57756, at 1,073,941 to 1,075,191
14919
mRNA_6552: 14920 - K03127 TAF13 transcription initiation factor TFIID subunit 13, at 1,075,632 to 1,076,180
14920
Group
Condition
mRNA
_6548
mRNA
_6549
mRNA
_6550
mRNA
_6551
mRNA
_6552
14916
14917
14918
14919
14920
ypd buoyancy
40 hrs Low Buoyancy
+0.1
-0.1
-2.4
-0.4
-0.0
facs on lipid accumulation
Sorted No BODIPY Gate
-0.1
-0.0
-1.0
-1.3
-0.1
facs on lipid accumulation
Sorted High BODIPY Gate
-0.1
-0.2
-1.0
-1.2
+0.2
ypd buoyancy
40 hrs No Buoyancy Separation
+0.0
-0.3
+0.3
-1.6
-0.7
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+0.1
-0.1
-1.1
+0.1
-0.0
buoyancy on lipid accumulation
40 hrs Median Buoyancy
-0.0
-0.1
+0.1
-0.9
+0.3
growth on ypd
YPD
+0.0
-0.2
-0.4
+0.2
-0.3
growth on oleic acid
YNB Glucose
-0.3
-0.2
+0.4
-0.6
+0.1
auxotrophy
Dropout Complete
+0.2
-0.2
+0.2
-1.5
+0.6
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-0.0
+0.0
+0.0
-0.3
-0.1
auxotrophy
YNB Glucose
+0.1
-0.2
+0.0
-0.7
+0.4
buoyancy on lipid accumulation
40 hrs High Buoyancy
-0.0
-0.1
-0.4
+0.1
+0.2
ypd buoyancy
40 hrs Median Buoyancy
+0.1
-0.1
-0.2
-0.1
+0.1
auxotrophy
YNB Glucose 75mM Methionine
+0.2
-0.2
-0.0
-0.7
+0.6
ypd buoyancy
40 hrs High Buoyancy
+0.1
-0.3
+0.8
+0.0
-0.7
growth on oleic acid
YNB Oleic Acid
-0.0
-0.1
+0.6
-0.6
+0.2
auxotrophy
YNB Glucose 75mM Arginine
+0.1
-0.2
+0.2
-0.4
+0.4
growth on ricinoleic acid
YNB Glucose
+0.1
-0.1
+0.4
+0.2
-0.6
growth on ricinoleic acid
YNB Methylricinoleic Acid
+0.1
-0.3
+0.7
-0.2
-0.2
growth on ricinoleic acid
YNB Ricinoleic Acid
-0.0
-0.2
+1.0
+0.2
-0.4
facs on lipid accumulation
Sorted Low BODIPY Gate
+0.1
-0.0
+0.2
+0.0
+0.3
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