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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
14919 and 14920 are separated by 440 nucleotides
14920 and 14921 are separated by 1560 nucleotides
14921 and 14922 are separated by 966 nucleotides
14922 and 14923 are separated by 880 nucleotides
mRNA_6551: 14919 - ProSiteProfiles-Zinc finger CCHC-type profile.-PS50158,SMART-zinc finger-SM00343,SUPERFAMILY--SSF57756, at 1,073,941 to 1,075,191
14919
mRNA_6552: 14920 - K03127 TAF13 transcription initiation factor TFIID subunit 13, at 1,075,632 to 1,076,180
14920
mRNA_6553: 14921 - SUPERFAMILY--SSF52266, at 1,077,741 to 1,079,727
14921
mRNA_6554: 14922 - K15258 PARP6_8 poly [ADP-ribose] polymerase 6/8, at 1,080,694 to 1,084,243
14922
mRNA_6555: 14923 - HMMPfam-F-box-like-PF12937,SUPERFAMILY--SSF52047, at 1,085,124 to 1,086,396
14923
Group
Condition
mRNA
_6551
mRNA
_6552
mRNA
_6553
mRNA
_6554
mRNA
_6555
14919
14920
14921
14922
14923
ypd buoyancy
40 hrs No Buoyancy Separation
-1.6
-0.7
-0.8
+0.6
-0.4
facs on lipid accumulation
Sorted Low BODIPY Gate
+0.0
+0.3
-3.3
+0.3
+0.2
facs on lipid accumulation
Sorted No BODIPY Gate
-1.3
-0.1
-0.3
-0.2
-0.3
buoyancy on lipid accumulation
40 hrs Median Buoyancy
-0.9
+0.3
-1.1
-0.2
+0.3
ypd buoyancy
40 hrs High Buoyancy
+0.0
-0.7
-0.6
-0.0
+0.1
ypd buoyancy
40 hrs Median Buoyancy
-0.1
+0.1
-1.1
-0.0
+0.4
buoyancy on lipid accumulation
40 hrs High Buoyancy
+0.1
+0.2
-1.2
-0.2
+0.6
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-0.3
-0.1
-0.2
-0.1
+0.3
growth on oleic acid
YNB Oleic Acid
-0.6
+0.2
+0.4
+0.2
-0.1
growth on ypd
YPD
+0.2
-0.3
+0.3
-0.0
+0.3
auxotrophy
Dropout Complete
-1.5
+0.6
+0.8
+0.1
+0.6
auxotrophy
YNB Glucose
-0.7
+0.4
+0.7
+0.1
+0.3
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+0.1
-0.0
+0.6
-0.2
+0.3
auxotrophy
YNB Glucose 75mM Arginine
-0.4
+0.4
+0.6
+0.1
+0.3
ypd buoyancy
40 hrs Low Buoyancy
-0.4
-0.0
+1.4
-0.2
+0.3
auxotrophy
YNB Glucose 75mM Methionine
-0.7
+0.6
+0.8
+0.2
+0.4
facs on lipid accumulation
Sorted High BODIPY Gate
-1.2
+0.2
+2.0
-0.0
+0.3
growth on oleic acid
YNB Glucose
-0.6
+0.1
+1.5
+0.1
+0.3
growth on ricinoleic acid
YNB Glucose
+0.2
-0.6
+2.0
+0.1
+0.3
growth on ricinoleic acid
YNB Methylricinoleic Acid
-0.2
-0.2
+3.4
+0.3
+0.1
growth on ricinoleic acid
YNB Ricinoleic Acid
+0.2
-0.4
+3.3
+0.4
+0.3
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