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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
14921 and 14922 are separated by 966 nucleotides
14922 and 14923 are separated by 880 nucleotides
14923 and 14924 are separated by 64 nucleotides
14924 and 14925 are separated by 250 nucleotides
mRNA_6553: 14921 - SUPERFAMILY--SSF52266, at 1,077,741 to 1,079,727
14921
mRNA_6554: 14922 - K15258 PARP6_8 poly [ADP-ribose] polymerase 6/8, at 1,080,694 to 1,084,243
14922
mRNA_6555: 14923 - HMMPfam-F-box-like-PF12937,SUPERFAMILY--SSF52047, at 1,085,124 to 1,086,396
14923
mRNA_6556: 14924 - K14793 RRP9 ribosomal RNA-processing protein 9, at 1,086,461 to 1,088,538
14924
mRNA_6557: 14925 - K13566 NIT2 omega-amidase, at 1,088,789 to 1,090,275
14925
Group
Condition
mRNA
_6553
mRNA
_6554
mRNA
_6555
mRNA
_6556
mRNA
_6557
14921
14922
14923
14924
14925
facs on lipid accumulation
Sorted Low BODIPY Gate
-3.3
+0.3
+0.2
N.D.
+0.2
buoyancy on lipid accumulation
40 hrs Median Buoyancy
-1.1
-0.2
+0.3
N.D.
-0.3
buoyancy on lipid accumulation
40 hrs High Buoyancy
-1.2
-0.2
+0.6
N.D.
-0.2
ypd buoyancy
40 hrs Median Buoyancy
-1.1
-0.0
+0.4
N.D.
-0.2
facs on lipid accumulation
Sorted No BODIPY Gate
-0.3
-0.2
-0.3
N.D.
+0.1
ypd buoyancy
40 hrs No Buoyancy Separation
-0.8
+0.6
-0.4
N.D.
-0.1
ypd buoyancy
40 hrs High Buoyancy
-0.6
-0.0
+0.1
N.D.
-0.1
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-0.2
-0.1
+0.3
N.D.
-0.4
growth on oleic acid
YNB Oleic Acid
+0.4
+0.2
-0.1
N.D.
-0.2
growth on ypd
YPD
+0.3
-0.0
+0.3
N.D.
-0.2
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+0.6
-0.2
+0.3
N.D.
-0.1
auxotrophy
YNB Glucose 75mM Arginine
+0.6
+0.1
+0.3
N.D.
-0.0
auxotrophy
YNB Glucose
+0.7
+0.1
+0.3
N.D.
+0.1
auxotrophy
YNB Glucose 75mM Methionine
+0.8
+0.2
+0.4
N.D.
-0.2
auxotrophy
Dropout Complete
+0.8
+0.1
+0.6
N.D.
-0.2
ypd buoyancy
40 hrs Low Buoyancy
+1.4
-0.2
+0.3
N.D.
+0.2
growth on oleic acid
YNB Glucose
+1.5
+0.1
+0.3
N.D.
-0.2
facs on lipid accumulation
Sorted High BODIPY Gate
+2.0
-0.0
+0.3
N.D.
-0.2
growth on ricinoleic acid
YNB Glucose
+2.0
+0.1
+0.3
N.D.
-0.1
growth on ricinoleic acid
YNB Methylricinoleic Acid
+3.4
+0.3
+0.1
N.D.
-0.4
growth on ricinoleic acid
YNB Ricinoleic Acid
+3.3
+0.4
+0.3
N.D.
+0.0
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