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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
14924 and 14925 are separated by 250 nucleotides
14925 and 14926 are separated by 344 nucleotides
14926 and 14927 are separated by 44 nucleotides
14927 and 14928 are separated by 1054 nucleotides
mRNA_6556: 14924 - K14793 RRP9 ribosomal RNA-processing protein 9, at 1,086,461 to 1,088,538
14924
mRNA_6557: 14925 - K13566 NIT2 omega-amidase, at 1,088,789 to 1,090,275
14925
mRNA_6558: 14926 - HMMPfam-Bacterial signalling protein N terminal repeat-PF03707, at 1,090,620 to 1,093,721
14926
mRNA_6559: 14927 - Hypothetical Protein, at 1,093,766 to 1,094,365
14927
mRNA_6560: 14928 - Hypothetical Protein, at 1,095,420 to 1,097,567
14928
Group
Condition
mRNA
_6556
mRNA
_6557
mRNA
_6558
mRNA
_6559
mRNA
_6560
14924
14925
14926
14927
14928
growth on ricinoleic acid
YNB Ricinoleic Acid
N.D.
+0.0
+0.1
+0.1
-1.7
facs on lipid accumulation
Sorted High BODIPY Gate
N.D.
-0.2
-1.1
+0.1
-0.1
ypd buoyancy
40 hrs No Buoyancy Separation
N.D.
-0.1
+0.2
+0.1
-1.5
growth on ricinoleic acid
YNB Methylricinoleic Acid
N.D.
-0.4
-0.0
+0.2
-0.7
growth on oleic acid
YNB Oleic Acid
N.D.
-0.2
-0.3
+0.1
-0.2
growth on oleic acid
YNB Glucose
N.D.
-0.2
-0.3
+0.1
-0.3
auxotrophy
Dropout Complete
N.D.
-0.2
-0.5
+0.1
-0.1
auxotrophy
YNB Glucose
N.D.
+0.1
-0.4
+0.1
-0.3
growth on ricinoleic acid
YNB Glucose
N.D.
-0.1
-0.2
+0.1
-0.3
ypd buoyancy
40 hrs Low Buoyancy
N.D.
+0.2
-0.0
+0.1
-0.6
facs on lipid accumulation
Sorted No BODIPY Gate
N.D.
+0.1
-0.4
+0.1
-0.1
auxotrophy
YNB Glucose 75mM Arginine
N.D.
-0.0
-0.1
+0.2
-0.4
ypd buoyancy
40 hrs Median Buoyancy
N.D.
-0.2
+0.1
+0.1
-0.3
auxotrophy
YNB Glucose 75mM Methionine
N.D.
-0.2
+0.1
+0.2
-0.2
ypd buoyancy
40 hrs High Buoyancy
N.D.
-0.1
+0.2
+0.1
-0.3
growth on ypd
YPD
N.D.
-0.2
+0.5
+0.0
-0.1
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
N.D.
-0.4
-0.1
-0.1
+1.5
buoyancy on lipid accumulation
40 hrs Low Buoyancy
N.D.
-0.1
-0.0
+0.0
+1.2
buoyancy on lipid accumulation
40 hrs High Buoyancy
N.D.
-0.2
+0.2
-0.2
+1.3
buoyancy on lipid accumulation
40 hrs Median Buoyancy
N.D.
-0.3
+0.1
-0.1
+1.4
facs on lipid accumulation
Sorted Low BODIPY Gate
N.D.
+0.2
+0.6
-0.1
+0.9
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