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Cofit
Protein
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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
14927 and 14928 are separated by 1054 nucleotides
14928 and 14929 are separated by 187 nucleotides
14929 and 14930 are separated by 160 nucleotides
14930 and 14931 are separated by 2441 nucleotides
mRNA_6559: 14927 - Hypothetical Protein, at 1,093,766 to 1,094,365
14927
mRNA_6560: 14928 - Hypothetical Protein, at 1,095,420 to 1,097,567
14928
mRNA_6561: 14929 - HMMPfam-F-box-like-PF12937,SUPERFAMILY--SSF52047, at 1,097,755 to 1,099,041
14929
mRNA_6562: 14930 - K20353 SEC16 COPII coat assembly protein SEC16, at 1,099,202 to 1,104,647
14930
mRNA_6563: 14931 - Hypothetical Protein, at 1,107,089 to 1,108,323
14931
Group
Condition
mRNA
_6559
mRNA
_6560
mRNA
_6561
mRNA
_6562
mRNA
_6563
14927
14928
14929
14930
14931
ypd buoyancy
40 hrs No Buoyancy Separation
+0.1
-1.5
-0.0
-1.6
-1.4
facs on lipid accumulation
Sorted No BODIPY Gate
+0.1
-0.1
-0.0
-2.1
+0.4
facs on lipid accumulation
Sorted High BODIPY Gate
+0.1
-0.1
-0.0
-1.8
+0.0
facs on lipid accumulation
Sorted Low BODIPY Gate
-0.1
+0.9
+0.0
-1.5
-0.1
auxotrophy
YNB Glucose 75mM Arginine
+0.2
-0.4
-0.3
+0.7
-0.3
ypd buoyancy
40 hrs Low Buoyancy
+0.1
-0.6
+0.2
+0.6
-0.2
ypd buoyancy
40 hrs Median Buoyancy
+0.1
-0.3
-0.1
+0.4
-0.2
ypd buoyancy
40 hrs High Buoyancy
+0.1
-0.3
+0.0
+0.6
-0.2
growth on oleic acid
YNB Glucose
+0.1
-0.3
-0.1
+0.8
-0.3
growth on ricinoleic acid
YNB Methylricinoleic Acid
+0.2
-0.7
-0.1
+1.6
-0.4
auxotrophy
YNB Glucose 75mM Methionine
+0.2
-0.2
-0.0
+0.7
-0.0
auxotrophy
Dropout Complete
+0.1
-0.1
-0.0
+0.8
-0.2
auxotrophy
YNB Glucose
+0.1
-0.3
-0.0
+1.0
-0.1
growth on oleic acid
YNB Oleic Acid
+0.1
-0.2
-0.0
+1.2
-0.3
growth on ricinoleic acid
YNB Ricinoleic Acid
+0.1
-1.7
+0.2
+2.0
+0.2
growth on ricinoleic acid
YNB Glucose
+0.1
-0.3
+0.2
+0.9
+0.0
growth on ypd
YPD
+0.0
-0.1
+0.4
+0.5
+0.4
buoyancy on lipid accumulation
40 hrs High Buoyancy
-0.2
+1.3
-0.0
+0.1
+0.1
buoyancy on lipid accumulation
40 hrs Median Buoyancy
-0.1
+1.4
+0.0
+0.3
+0.0
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+0.0
+1.2
+0.3
+0.3
+0.0
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-0.1
+1.5
-0.1
+0.6
-0.1
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