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Cofit
Protein
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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
14929 and 14930 are separated by 160 nucleotides
14930 and 14931 are separated by 2441 nucleotides
14931 and 14932 are separated by 334 nucleotides
14932 and 14933 are separated by 31 nucleotides
mRNA_6561: 14929 - HMMPfam-F-box-like-PF12937,SUPERFAMILY--SSF52047, at 1,097,755 to 1,099,041
14929
mRNA_6562: 14930 - K20353 SEC16 COPII coat assembly protein SEC16, at 1,099,202 to 1,104,647
14930
mRNA_6563: 14931 - Hypothetical Protein, at 1,107,089 to 1,108,323
14931
mRNA_6564: 14932 - Hypothetical Protein, at 1,108,658 to 1,110,083
14932
mRNA_6565: 14933 - SUPERFAMILY--SSF52777, at 1,110,115 to 1,112,208
14933
Group
Condition
mRNA
_6561
mRNA
_6562
mRNA
_6563
mRNA
_6564
mRNA
_6565
14929
14930
14931
14932
14933
ypd buoyancy
40 hrs No Buoyancy Separation
-0.0
-1.6
-1.4
+0.2
+0.1
facs on lipid accumulation
Sorted No BODIPY Gate
-0.0
-2.1
+0.4
-0.3
-0.2
facs on lipid accumulation
Sorted High BODIPY Gate
-0.0
-1.8
+0.0
-0.1
+0.1
facs on lipid accumulation
Sorted Low BODIPY Gate
+0.0
-1.5
-0.1
-0.1
-0.0
growth on oleic acid
YNB Glucose
-0.1
+0.8
-0.3
-0.5
-0.0
buoyancy on lipid accumulation
40 hrs High Buoyancy
-0.0
+0.1
+0.1
-0.2
+0.1
ypd buoyancy
40 hrs Median Buoyancy
-0.1
+0.4
-0.2
+0.0
-0.1
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+0.0
+0.3
+0.0
-0.2
-0.0
ypd buoyancy
40 hrs High Buoyancy
+0.0
+0.6
-0.2
+0.2
-0.3
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-0.1
+0.6
-0.1
+0.1
-0.2
auxotrophy
YNB Glucose 75mM Arginine
-0.3
+0.7
-0.3
+0.1
+0.1
ypd buoyancy
40 hrs Low Buoyancy
+0.2
+0.6
-0.2
+0.1
-0.2
growth on oleic acid
YNB Oleic Acid
-0.0
+1.2
-0.3
-0.4
+0.2
growth on ricinoleic acid
YNB Methylricinoleic Acid
-0.1
+1.6
-0.4
-0.2
-0.1
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+0.3
+0.3
+0.0
+0.2
+0.0
auxotrophy
YNB Glucose
-0.0
+1.0
-0.1
+0.0
-0.0
growth on ricinoleic acid
YNB Glucose
+0.2
+0.9
+0.0
-0.2
-0.0
auxotrophy
YNB Glucose 75mM Methionine
-0.0
+0.7
-0.0
+0.1
+0.2
auxotrophy
Dropout Complete
-0.0
+0.8
-0.2
+0.4
+0.2
growth on ypd
YPD
+0.4
+0.5
+0.4
+0.1
+0.0
growth on ricinoleic acid
YNB Ricinoleic Acid
+0.2
+2.0
+0.2
-0.6
+0.1
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