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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
14934 and 14935 are separated by 283 nucleotides
14935 and 14936 are separated by 458 nucleotides
14936 and 14937 are separated by 1404 nucleotides
14937 and 14938 are separated by 350 nucleotides
mRNA_6566: 14934 - HMMPfam-Alpha/beta hydrolase family-PF12697,SUPERFAMILY--SSF53474, at 1,112,309 to 1,113,884
14934
mRNA_6567: 14935 - KOG2662 Magnesium transporters CorA family, at 1,114,168 to 1,116,354
14935
mRNA_6568: 14936 - BLAST Protein IWS1 homolog A [Rhizoctonia solani], at 1,116,813 to 1,120,702
14936
mRNA_6569: 14937 - K02978 RP-S27e, RPS27 small subunit ribosomal protein S27e, at 1,122,107 to 1,122,716
14937
mRNA_6570: 14938 - K09184 GATAF GATA-binding protein, other eukaryote, at 1,123,067 to 1,127,630
14938
Group
Condition
mRNA
_6566
mRNA
_6567
mRNA
_6568
mRNA
_6569
mRNA
_6570
14934
14935
14936
14937
14938
ypd buoyancy
40 hrs No Buoyancy Separation
+0.0
-0.8
-1.7
N.D.
-0.2
buoyancy on lipid accumulation
40 hrs Median Buoyancy
-0.1
+0.2
-0.8
N.D.
-0.6
growth on ricinoleic acid
YNB Ricinoleic Acid
+0.1
-0.3
-0.9
N.D.
+0.1
buoyancy on lipid accumulation
40 hrs High Buoyancy
-0.1
+0.2
-1.1
N.D.
+0.0
auxotrophy
YNB Glucose
-0.2
-0.4
-0.4
N.D.
+0.0
growth on ricinoleic acid
YNB Methylricinoleic Acid
+0.2
-0.1
-1.0
N.D.
+0.1
facs on lipid accumulation
Sorted High BODIPY Gate
+0.1
+0.2
-0.9
N.D.
-0.1
growth on ricinoleic acid
YNB Glucose
-0.0
-0.1
-0.4
N.D.
-0.1
growth on oleic acid
YNB Glucose
-0.2
+0.1
-0.2
N.D.
-0.3
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-0.1
+0.5
-0.6
N.D.
-0.2
auxotrophy
YNB Glucose 75mM Methionine
-0.1
-0.3
-0.1
N.D.
+0.2
auxotrophy
Dropout Complete
-0.2
-0.4
-0.1
N.D.
+0.4
growth on oleic acid
YNB Oleic Acid
-0.5
+0.3
+0.1
N.D.
-0.0
facs on lipid accumulation
Sorted No BODIPY Gate
-0.1
+0.6
+0.2
N.D.
-0.6
facs on lipid accumulation
Sorted Low BODIPY Gate
+0.2
-0.3
+0.5
N.D.
-0.0
auxotrophy
YNB Glucose 75mM Arginine
+0.0
-0.0
+0.3
N.D.
+0.1
ypd buoyancy
40 hrs High Buoyancy
+0.2
-0.2
+0.7
N.D.
-0.1
growth on ypd
YPD
+0.3
-0.3
+0.7
N.D.
+0.2
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+0.1
+0.3
+0.9
N.D.
-0.4
ypd buoyancy
40 hrs Median Buoyancy
+0.1
+0.1
+1.1
N.D.
+0.0
ypd buoyancy
40 hrs Low Buoyancy
+0.4
+0.0
+1.1
N.D.
+0.2
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