Fitness for 5 genes in Rhodosporidium toruloides IFO0880

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Top 21 experiments (either direction), sorted by average fitness

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500 nt 14936 and 14937 are separated by 1404 nucleotides14937 and 14938 are separated by 350 nucleotides14938 and 14939 are separated by 970 nucleotides14939 and 14940 are separated by 337 nucleotides mRNA_6568: 14936 - BLAST Protein IWS1 homolog A [Rhizoctonia solani], at 1,116,813 to 1,120,702 14936 mRNA_6569: 14937 - K02978 RP-S27e, RPS27 small subunit ribosomal protein S27e, at 1,122,107 to 1,122,716 14937 mRNA_6570: 14938 - K09184 GATAF GATA-binding protein, other eukaryote, at 1,123,067 to 1,127,630 14938 mRNA_6571: 14939 - K11790 DTL, CDT2, DCAF2 denticleless, at 1,128,601 to 1,130,974 14939 mRNA_6572: 14940 - HMMPfam-RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)-PF00076,HMMPfam-Nuclear transport factor 2 (NTF2) domain-PF02136,ProSiteProfiles-Eukaryotic RNA Recognition Motif (RRM) profile.-PS50102,ProSiteProfiles-Nuclear transport factor 2 domain profile.-PS50177,SMART-WD40 repeats-SM00320,SMART-RNA recognition motif-SM00360,SUPERFAMILY--SSF50998,SUPERFAMILY--SSF54427,SUPERFAMILY--SSF54928, at 1,131,312 to 1,136,542 14940
Group Condition mRNA_6568 mRNA_6569 mRNA_6570 mRNA_6571 mRNA_6572
14936 14937 14938 14939 14940
buoyancy on lipid accumulation 40 hrs Median Buoyancy -0.8 N.D. -0.6 -0.4 -0.1
buoyancy on lipid accumulation 40 hrs High Buoyancy -1.1 N.D. +0.0 -0.5 -0.1
buoyancy on lipid accumulation 40 hrs No Buoyancy Separation -0.6 N.D. -0.2 -0.7 -0.1
growth on ricinoleic acid YNB Ricinoleic Acid -0.9 N.D. +0.1 -0.5 -0.1
auxotrophy YNB Glucose -0.4 N.D. +0.0 -0.9 +0.0
ypd buoyancy 40 hrs No Buoyancy Separation -1.7 N.D. -0.2 +0.6 +0.1
growth on ricinoleic acid YNB Methylricinoleic Acid -1.0 N.D. +0.1 -0.3 +0.1
facs on lipid accumulation Sorted High BODIPY Gate -0.9 N.D. -0.1 -0.2 +0.2
growth on oleic acid YNB Glucose -0.2 N.D. -0.3 -0.5 -0.0
growth on ricinoleic acid YNB Glucose -0.4 N.D. -0.1 -0.2 -0.2
growth on oleic acid YNB Oleic Acid +0.1 N.D. -0.0 -1.0 +0.1
facs on lipid accumulation Sorted No BODIPY Gate +0.2 N.D. -0.6 -0.2 -0.0
auxotrophy YNB Glucose 75mM Methionine -0.1 N.D. +0.2 -0.8 +0.3
auxotrophy YNB Glucose 75mM Arginine +0.3 N.D. +0.1 -0.9 +0.1
facs on lipid accumulation Sorted Low BODIPY Gate +0.5 N.D. -0.0 -0.7 +0.0
auxotrophy Dropout Complete -0.1 N.D. +0.4 -0.7 +0.3
growth on ypd YPD +0.7 N.D. +0.2 -0.5 -0.3
buoyancy on lipid accumulation 40 hrs Low Buoyancy +0.9 N.D. -0.4 +0.1 +0.2
ypd buoyancy 40 hrs High Buoyancy +0.7 N.D. -0.1 -0.1 +0.3
ypd buoyancy 40 hrs Low Buoyancy +1.1 N.D. +0.2 -0.6 +0.2
ypd buoyancy 40 hrs Median Buoyancy +1.1 N.D. +0.0 +0.3 +0.2
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