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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
14936 and 14937 are separated by 1404 nucleotides
14937 and 14938 are separated by 350 nucleotides
14938 and 14939 are separated by 970 nucleotides
14939 and 14940 are separated by 337 nucleotides
mRNA_6568: 14936 - BLAST Protein IWS1 homolog A [Rhizoctonia solani], at 1,116,813 to 1,120,702
14936
mRNA_6569: 14937 - K02978 RP-S27e, RPS27 small subunit ribosomal protein S27e, at 1,122,107 to 1,122,716
14937
mRNA_6570: 14938 - K09184 GATAF GATA-binding protein, other eukaryote, at 1,123,067 to 1,127,630
14938
mRNA_6571: 14939 - K11790 DTL, CDT2, DCAF2 denticleless, at 1,128,601 to 1,130,974
14939
mRNA_6572: 14940 - HMMPfam-RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)-PF00076,HMMPfam-Nuclear transport factor 2 (NTF2) domain-PF02136,ProSiteProfiles-Eukaryotic RNA Recognition Motif (RRM) profile.-PS50102,ProSiteProfiles-Nuclear transport factor 2 domain profile.-PS50177,SMART-WD40 repeats-SM00320,SMART-RNA recognition motif-SM00360,SUPERFAMILY--SSF50998,SUPERFAMILY--SSF54427,SUPERFAMILY--SSF54928, at 1,131,312 to 1,136,542
14940
Group
Condition
mRNA
_6568
mRNA
_6569
mRNA
_6570
mRNA
_6571
mRNA
_6572
14936
14937
14938
14939
14940
buoyancy on lipid accumulation
40 hrs Median Buoyancy
-0.8
N.D.
-0.6
-0.4
-0.1
buoyancy on lipid accumulation
40 hrs High Buoyancy
-1.1
N.D.
+0.0
-0.5
-0.1
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-0.6
N.D.
-0.2
-0.7
-0.1
growth on ricinoleic acid
YNB Ricinoleic Acid
-0.9
N.D.
+0.1
-0.5
-0.1
auxotrophy
YNB Glucose
-0.4
N.D.
+0.0
-0.9
+0.0
ypd buoyancy
40 hrs No Buoyancy Separation
-1.7
N.D.
-0.2
+0.6
+0.1
growth on ricinoleic acid
YNB Methylricinoleic Acid
-1.0
N.D.
+0.1
-0.3
+0.1
facs on lipid accumulation
Sorted High BODIPY Gate
-0.9
N.D.
-0.1
-0.2
+0.2
growth on oleic acid
YNB Glucose
-0.2
N.D.
-0.3
-0.5
-0.0
growth on ricinoleic acid
YNB Glucose
-0.4
N.D.
-0.1
-0.2
-0.2
growth on oleic acid
YNB Oleic Acid
+0.1
N.D.
-0.0
-1.0
+0.1
facs on lipid accumulation
Sorted No BODIPY Gate
+0.2
N.D.
-0.6
-0.2
-0.0
auxotrophy
YNB Glucose 75mM Methionine
-0.1
N.D.
+0.2
-0.8
+0.3
auxotrophy
YNB Glucose 75mM Arginine
+0.3
N.D.
+0.1
-0.9
+0.1
facs on lipid accumulation
Sorted Low BODIPY Gate
+0.5
N.D.
-0.0
-0.7
+0.0
auxotrophy
Dropout Complete
-0.1
N.D.
+0.4
-0.7
+0.3
growth on ypd
YPD
+0.7
N.D.
+0.2
-0.5
-0.3
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+0.9
N.D.
-0.4
+0.1
+0.2
ypd buoyancy
40 hrs High Buoyancy
+0.7
N.D.
-0.1
-0.1
+0.3
ypd buoyancy
40 hrs Low Buoyancy
+1.1
N.D.
+0.2
-0.6
+0.2
ypd buoyancy
40 hrs Median Buoyancy
+1.1
N.D.
+0.0
+0.3
+0.2
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