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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
14938 and 14939 are separated by 970 nucleotides
14939 and 14940 are separated by 337 nucleotides
14940 and 14941 are separated by 275 nucleotides
14941 and 14942 are separated by 320 nucleotides
mRNA_6570: 14938 - K09184 GATAF GATA-binding protein, other eukaryote, at 1,123,067 to 1,127,630
14938
mRNA_6571: 14939 - K11790 DTL, CDT2, DCAF2 denticleless, at 1,128,601 to 1,130,974
14939
mRNA_6572: 14940 - HMMPfam-RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)-PF00076,HMMPfam-Nuclear transport factor 2 (NTF2) domain-PF02136,ProSiteProfiles-Eukaryotic RNA Recognition Motif (RRM) profile.-PS50102,ProSiteProfiles-Nuclear transport factor 2 domain profile.-PS50177,SMART-WD40 repeats-SM00320,SMART-RNA recognition motif-SM00360,SUPERFAMILY--SSF50998,SUPERFAMILY--SSF54427,SUPERFAMILY--SSF54928, at 1,131,312 to 1,136,542
14940
mRNA_6573: 14941 - K20472 COPZ, RET3 coatomer subunit zeta, at 1,136,818 to 1,137,633
14941
mRNA_6574: 14942 - K18258 CRYM thiomorpholine-carboxylate dehydrogenase, at 1,137,954 to 1,139,326
14942
Group
Condition
mRNA
_6570
mRNA
_6571
mRNA
_6572
mRNA
_6573
mRNA
_6574
14938
14939
14940
14941
14942
auxotrophy
YNB Glucose
+0.0
-0.9
+0.0
N.D.
-0.5
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-0.2
-0.7
-0.1
N.D.
-0.3
facs on lipid accumulation
Sorted Low BODIPY Gate
-0.0
-0.7
+0.0
N.D.
-0.4
auxotrophy
YNB Glucose 75mM Arginine
+0.1
-0.9
+0.1
N.D.
-0.4
buoyancy on lipid accumulation
40 hrs Median Buoyancy
-0.6
-0.4
-0.1
N.D.
-0.0
facs on lipid accumulation
Sorted No BODIPY Gate
-0.6
-0.2
-0.0
N.D.
-0.2
growth on oleic acid
YNB Glucose
-0.3
-0.5
-0.0
N.D.
-0.1
auxotrophy
YNB Glucose 75mM Methionine
+0.2
-0.8
+0.3
N.D.
-0.5
growth on oleic acid
YNB Oleic Acid
-0.0
-1.0
+0.1
N.D.
+0.1
buoyancy on lipid accumulation
40 hrs High Buoyancy
+0.0
-0.5
-0.1
N.D.
-0.1
growth on ricinoleic acid
YNB Glucose
-0.1
-0.2
-0.2
N.D.
-0.2
auxotrophy
Dropout Complete
+0.4
-0.7
+0.3
N.D.
-0.6
growth on ricinoleic acid
YNB Ricinoleic Acid
+0.1
-0.5
-0.1
N.D.
-0.2
facs on lipid accumulation
Sorted High BODIPY Gate
-0.1
-0.2
+0.2
N.D.
-0.2
growth on ricinoleic acid
YNB Methylricinoleic Acid
+0.1
-0.3
+0.1
N.D.
-0.3
growth on ypd
YPD
+0.2
-0.5
-0.3
N.D.
+0.3
buoyancy on lipid accumulation
40 hrs Low Buoyancy
-0.4
+0.1
+0.2
N.D.
+0.0
ypd buoyancy
40 hrs Low Buoyancy
+0.2
-0.6
+0.2
N.D.
+0.1
ypd buoyancy
40 hrs High Buoyancy
-0.1
-0.1
+0.3
N.D.
+0.1
ypd buoyancy
40 hrs No Buoyancy Separation
-0.2
+0.6
+0.1
N.D.
-0.3
ypd buoyancy
40 hrs Median Buoyancy
+0.0
+0.3
+0.2
N.D.
+0.1
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