Fitness for 5 genes in Rhodosporidium toruloides IFO0880

Add gene:

Number of genes on each side:  

Top 21 experiments (either direction), sorted by average fitness

Or view all 21 experiments or choose conditions or try the comparative fitness browser

500 nt 14939 and 14940 are separated by 337 nucleotides14940 and 14941 are separated by 275 nucleotides14941 and 14942 are separated by 320 nucleotides14942 and 14943 are separated by 483 nucleotides mRNA_6571: 14939 - K11790 DTL, CDT2, DCAF2 denticleless, at 1,128,601 to 1,130,974 14939 mRNA_6572: 14940 - HMMPfam-RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)-PF00076,HMMPfam-Nuclear transport factor 2 (NTF2) domain-PF02136,ProSiteProfiles-Eukaryotic RNA Recognition Motif (RRM) profile.-PS50102,ProSiteProfiles-Nuclear transport factor 2 domain profile.-PS50177,SMART-WD40 repeats-SM00320,SMART-RNA recognition motif-SM00360,SUPERFAMILY--SSF50998,SUPERFAMILY--SSF54427,SUPERFAMILY--SSF54928, at 1,131,312 to 1,136,542 14940 mRNA_6573: 14941 - K20472 COPZ, RET3 coatomer subunit zeta, at 1,136,818 to 1,137,633 14941 mRNA_6574: 14942 - K18258 CRYM thiomorpholine-carboxylate dehydrogenase, at 1,137,954 to 1,139,326 14942 mRNA_6575: 14943 - KOG0440 Cell cycle-associated protein Mob1-1, at 1,139,810 to 1,140,979 14943
Group Condition mRNA_6571 mRNA_6572 mRNA_6573 mRNA_6574 mRNA_6575
14939 14940 14941 14942 14943
auxotrophy YNB Glucose -0.9 +0.0 N.D. -0.5 N.D.
auxotrophy YNB Glucose 75mM Arginine -0.9 +0.1 N.D. -0.4 N.D.
facs on lipid accumulation Sorted Low BODIPY Gate -0.7 +0.0 N.D. -0.4 N.D.
buoyancy on lipid accumulation 40 hrs No Buoyancy Separation -0.7 -0.1 N.D. -0.3 N.D.
auxotrophy Dropout Complete -0.7 +0.3 N.D. -0.6 N.D.
auxotrophy YNB Glucose 75mM Methionine -0.8 +0.3 N.D. -0.5 N.D.
growth on oleic acid YNB Oleic Acid -1.0 +0.1 N.D. +0.1 N.D.
buoyancy on lipid accumulation 40 hrs High Buoyancy -0.5 -0.1 N.D. -0.1 N.D.
growth on ricinoleic acid YNB Ricinoleic Acid -0.5 -0.1 N.D. -0.2 N.D.
growth on oleic acid YNB Glucose -0.5 -0.0 N.D. -0.1 N.D.
growth on ricinoleic acid YNB Glucose -0.2 -0.2 N.D. -0.2 N.D.
growth on ypd YPD -0.5 -0.3 N.D. +0.3 N.D.
growth on ricinoleic acid YNB Methylricinoleic Acid -0.3 +0.1 N.D. -0.3 N.D.
buoyancy on lipid accumulation 40 hrs Median Buoyancy -0.4 -0.1 N.D. -0.0 N.D.
facs on lipid accumulation Sorted No BODIPY Gate -0.2 -0.0 N.D. -0.2 N.D.
ypd buoyancy 40 hrs Low Buoyancy -0.6 +0.2 N.D. +0.1 N.D.
facs on lipid accumulation Sorted High BODIPY Gate -0.2 +0.2 N.D. -0.2 N.D.
buoyancy on lipid accumulation 40 hrs Low Buoyancy +0.1 +0.2 N.D. +0.0 N.D.
ypd buoyancy 40 hrs High Buoyancy -0.1 +0.3 N.D. +0.1 N.D.
ypd buoyancy 40 hrs No Buoyancy Separation +0.6 +0.1 N.D. -0.3 N.D.
ypd buoyancy 40 hrs Median Buoyancy +0.3 +0.2 N.D. +0.1 N.D.
remove
mRNA_6571
plot		 remove
mRNA_6572
plot		 remove
mRNA_6573		 remove
mRNA_6574
plot		 remove
mRNA_6575
plot