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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
14942 and 14943 are separated by 483 nucleotides
14943 and 14944 are separated by 453 nucleotides
14944 and 14945 are separated by 359 nucleotides
14945 and 14946 are separated by 394 nucleotides
mRNA_6574: 14942 - K18258 CRYM thiomorpholine-carboxylate dehydrogenase, at 1,137,954 to 1,139,326
14942
mRNA_6575: 14943 - KOG0440 Cell cycle-associated protein Mob1-1, at 1,139,810 to 1,140,979
14943
mRNA_6576: 14944 - K14709 SLC39A1_2_3, ZIP1_2_3 solute carrier family 39 (zinc transporter), member 1/2/3, at 1,141,433 to 1,143,037
14944
mRNA_6577: 14945 - ProSiteProfiles-Chromo and chromo shadow domain profile.-PS50013,SUPERFAMILY--SSF54160, at 1,143,397 to 1,147,463
14945
mRNA_6578: 14946 - HMMPfam-pfkB family carbohydrate kinase-PF00294,SUPERFAMILY--SSF53613, at 1,147,858 to 1,149,094
14946
Group
Condition
mRNA
_6574
mRNA
_6575
mRNA
_6576
mRNA
_6577
mRNA
_6578
14942
14943
14944
14945
14946
buoyancy on lipid accumulation
40 hrs High Buoyancy
-0.1
N.D.
-0.3
-0.3
-0.2
facs on lipid accumulation
Sorted Low BODIPY Gate
-0.4
N.D.
-0.1
-0.3
+0.0
auxotrophy
Dropout Complete
-0.6
N.D.
+0.2
+0.3
-0.8
auxotrophy
YNB Glucose
-0.5
N.D.
+0.1
+0.1
-0.5
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-0.3
N.D.
-0.1
-0.3
-0.0
auxotrophy
YNB Glucose 75mM Arginine
-0.4
N.D.
-0.0
+0.2
-0.2
buoyancy on lipid accumulation
40 hrs Median Buoyancy
-0.0
N.D.
-0.1
-0.5
+0.2
ypd buoyancy
40 hrs No Buoyancy Separation
-0.3
N.D.
+0.2
-0.2
+0.1
auxotrophy
YNB Glucose 75mM Methionine
-0.5
N.D.
+0.1
+0.0
+0.1
facs on lipid accumulation
Sorted High BODIPY Gate
-0.2
N.D.
-0.2
+0.1
+0.1
ypd buoyancy
40 hrs Median Buoyancy
+0.1
N.D.
+0.1
-0.1
-0.2
growth on oleic acid
YNB Glucose
-0.1
N.D.
+0.1
+0.3
-0.3
growth on oleic acid
YNB Oleic Acid
+0.1
N.D.
+0.2
+0.1
-0.4
facs on lipid accumulation
Sorted No BODIPY Gate
-0.2
N.D.
-0.1
-0.1
+0.5
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+0.0
N.D.
+0.0
+0.1
-0.0
ypd buoyancy
40 hrs Low Buoyancy
+0.1
N.D.
+0.1
+0.1
+0.1
growth on ricinoleic acid
YNB Ricinoleic Acid
-0.2
N.D.
+0.0
+0.6
+0.0
growth on ricinoleic acid
YNB Glucose
-0.2
N.D.
+0.2
+0.3
+0.1
ypd buoyancy
40 hrs High Buoyancy
+0.1
N.D.
+0.0
+0.4
+0.0
growth on ricinoleic acid
YNB Methylricinoleic Acid
-0.3
N.D.
+0.3
+0.4
+0.2
growth on ypd
YPD
+0.3
N.D.
+0.1
-0.0
+0.4
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