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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
14944 and 14945 are separated by 359 nucleotides
14945 and 14946 are separated by 394 nucleotides
14946 and 14947 are separated by 60 nucleotides
14947 and 14948 are separated by 134 nucleotides
mRNA_6576: 14944 - K14709 SLC39A1_2_3, ZIP1_2_3 solute carrier family 39 (zinc transporter), member 1/2/3, at 1,141,433 to 1,143,037
14944
mRNA_6577: 14945 - ProSiteProfiles-Chromo and chromo shadow domain profile.-PS50013,SUPERFAMILY--SSF54160, at 1,143,397 to 1,147,463
14945
mRNA_6578: 14946 - HMMPfam-pfkB family carbohydrate kinase-PF00294,SUPERFAMILY--SSF53613, at 1,147,858 to 1,149,094
14946
mRNA_6579: 14947 - KOG0871 Class 2 transcription repressor NC2, beta subunit (Dr1), at 1,149,155 to 1,149,894
14947
mRNA_6580: 14948 - K11098 SNRPF, SMF small nuclear ribonucleoprotein F, at 1,150,029 to 1,150,564
14948
Group
Condition
mRNA
_6576
mRNA
_6577
mRNA
_6578
mRNA
_6579
mRNA
_6580
14944
14945
14946
14947
14948
buoyancy on lipid accumulation
40 hrs High Buoyancy
-0.3
-0.3
-0.2
N.D.
N.D.
buoyancy on lipid accumulation
40 hrs Median Buoyancy
-0.1
-0.5
+0.2
N.D.
N.D.
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-0.1
-0.3
-0.0
N.D.
N.D.
facs on lipid accumulation
Sorted Low BODIPY Gate
-0.1
-0.3
+0.0
N.D.
N.D.
auxotrophy
YNB Glucose
+0.1
+0.1
-0.5
N.D.
N.D.
ypd buoyancy
40 hrs Median Buoyancy
+0.1
-0.1
-0.2
N.D.
N.D.
auxotrophy
Dropout Complete
+0.2
+0.3
-0.8
N.D.
N.D.
auxotrophy
YNB Glucose 75mM Arginine
-0.0
+0.2
-0.2
N.D.
N.D.
growth on oleic acid
YNB Oleic Acid
+0.2
+0.1
-0.4
N.D.
N.D.
ypd buoyancy
40 hrs No Buoyancy Separation
+0.2
-0.2
+0.1
N.D.
N.D.
facs on lipid accumulation
Sorted High BODIPY Gate
-0.2
+0.1
+0.1
N.D.
N.D.
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+0.0
+0.1
-0.0
N.D.
N.D.
growth on oleic acid
YNB Glucose
+0.1
+0.3
-0.3
N.D.
N.D.
ypd buoyancy
40 hrs Low Buoyancy
+0.1
+0.1
+0.1
N.D.
N.D.
auxotrophy
YNB Glucose 75mM Methionine
+0.1
+0.0
+0.1
N.D.
N.D.
facs on lipid accumulation
Sorted No BODIPY Gate
-0.1
-0.1
+0.5
N.D.
N.D.
ypd buoyancy
40 hrs High Buoyancy
+0.0
+0.4
+0.0
N.D.
N.D.
growth on ypd
YPD
+0.1
-0.0
+0.4
N.D.
N.D.
growth on ricinoleic acid
YNB Ricinoleic Acid
+0.0
+0.6
+0.0
N.D.
N.D.
growth on ricinoleic acid
YNB Glucose
+0.2
+0.3
+0.1
N.D.
N.D.
growth on ricinoleic acid
YNB Methylricinoleic Acid
+0.3
+0.4
+0.2
N.D.
N.D.
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