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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
14948 and 14949 are separated by 392 nucleotides
14949 and 14950 are separated by 396 nucleotides
14950 and 14951 are separated by 241 nucleotides
14951 and 14952 are separated by 257 nucleotides
mRNA_6580: 14948 - K11098 SNRPF, SMF small nuclear ribonucleoprotein F, at 1,150,029 to 1,150,564
14948
mRNA_6581: 14949 - HMMPfam-Major Facilitator Superfamily-PF07690,ProSiteProfiles-Major facilitator superfamily (MFS) profile.-PS50850,SUPERFAMILY--SSF103473, at 1,150,957 to 1,153,150
14949
mRNA_6582: 14950 - K11517 HAO (S)-2-hydroxy-acid oxidase, at 1,153,547 to 1,155,730
14950
mRNA_6583: 14951 - Hypothetical Protein, at 1,155,972 to 1,156,740
14951
mRNA_6584: 14952 - BLAST conserved fungal protein [Moniliophthora roreri M..., at 1,156,998 to 1,158,923
14952
Group
Condition
mRNA
_6580
mRNA
_6581
mRNA
_6582
mRNA
_6583
mRNA
_6584
14948
14949
14950
14951
14952
facs on lipid accumulation
Sorted Low BODIPY Gate
N.D.
-0.1
-1.5
N.D.
-1.8
ypd buoyancy
40 hrs No Buoyancy Separation
N.D.
-0.1
-0.3
N.D.
-1.5
growth on ypd
YPD
N.D.
-0.3
-0.1
N.D.
-0.3
facs on lipid accumulation
Sorted No BODIPY Gate
N.D.
+0.1
-0.4
N.D.
-0.3
auxotrophy
Dropout Complete
N.D.
-0.7
+0.8
N.D.
-0.7
facs on lipid accumulation
Sorted High BODIPY Gate
N.D.
-0.5
-0.5
N.D.
+0.5
ypd buoyancy
40 hrs Median Buoyancy
N.D.
+0.4
-0.4
N.D.
-0.1
buoyancy on lipid accumulation
40 hrs Median Buoyancy
N.D.
+0.1
-0.3
N.D.
+0.2
growth on oleic acid
YNB Glucose
N.D.
+0.6
-0.3
N.D.
-0.1
ypd buoyancy
40 hrs High Buoyancy
N.D.
+0.2
-0.0
N.D.
+0.0
auxotrophy
YNB Glucose 75mM Arginine
N.D.
-0.3
+1.1
N.D.
-0.5
growth on oleic acid
YNB Oleic Acid
N.D.
+0.3
+0.1
N.D.
-0.1
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
N.D.
+0.2
+0.1
N.D.
-0.0
auxotrophy
YNB Glucose
N.D.
-0.0
+0.8
N.D.
-0.4
ypd buoyancy
40 hrs Low Buoyancy
N.D.
+0.5
-0.1
N.D.
+0.2
buoyancy on lipid accumulation
40 hrs High Buoyancy
N.D.
+0.3
+0.1
N.D.
+0.3
auxotrophy
YNB Glucose 75mM Methionine
N.D.
-0.1
+0.8
N.D.
+0.1
growth on ricinoleic acid
YNB Ricinoleic Acid
N.D.
+0.3
+0.2
N.D.
+0.5
growth on ricinoleic acid
YNB Methylricinoleic Acid
N.D.
+0.1
+0.4
N.D.
+0.7
buoyancy on lipid accumulation
40 hrs Low Buoyancy
N.D.
+0.6
-0.1
N.D.
+0.8
growth on ricinoleic acid
YNB Glucose
N.D.
+0.4
+0.3
N.D.
+0.7
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