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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
14949 and 14950 are separated by 396 nucleotides
14950 and 14951 are separated by 241 nucleotides
14951 and 14952 are separated by 257 nucleotides
14952 and 14953 are separated by 2494 nucleotides
mRNA_6581: 14949 - HMMPfam-Major Facilitator Superfamily-PF07690,ProSiteProfiles-Major facilitator superfamily (MFS) profile.-PS50850,SUPERFAMILY--SSF103473, at 1,150,957 to 1,153,150
14949
mRNA_6582: 14950 - K11517 HAO (S)-2-hydroxy-acid oxidase, at 1,153,547 to 1,155,730
14950
mRNA_6583: 14951 - Hypothetical Protein, at 1,155,972 to 1,156,740
14951
mRNA_6584: 14952 - BLAST conserved fungal protein [Moniliophthora roreri M..., at 1,156,998 to 1,158,923
14952
mRNA_6585: 14953 - K14850 RRP8 ribosomal RNA-processing protein 8, at 1,161,418 to 1,162,965
14953
Group
Condition
mRNA
_6581
mRNA
_6582
mRNA
_6583
mRNA
_6584
mRNA
_6585
14949
14950
14951
14952
14953
ypd buoyancy
40 hrs No Buoyancy Separation
-0.1
-0.3
N.D.
-1.5
-2.4
facs on lipid accumulation
Sorted Low BODIPY Gate
-0.1
-1.5
N.D.
-1.8
-0.7
facs on lipid accumulation
Sorted No BODIPY Gate
+0.1
-0.4
N.D.
-0.3
-0.8
facs on lipid accumulation
Sorted High BODIPY Gate
-0.5
-0.5
N.D.
+0.5
-0.7
growth on ypd
YPD
-0.3
-0.1
N.D.
-0.3
-0.4
ypd buoyancy
40 hrs Median Buoyancy
+0.4
-0.4
N.D.
-0.1
-0.6
ypd buoyancy
40 hrs High Buoyancy
+0.2
-0.0
N.D.
+0.0
-0.6
auxotrophy
Dropout Complete
-0.7
+0.8
N.D.
-0.7
+0.5
growth on oleic acid
YNB Glucose
+0.6
-0.3
N.D.
-0.1
-0.1
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+0.1
-0.3
N.D.
+0.2
+0.2
auxotrophy
YNB Glucose
-0.0
+0.8
N.D.
-0.4
-0.1
growth on oleic acid
YNB Oleic Acid
+0.3
+0.1
N.D.
-0.1
+0.1
ypd buoyancy
40 hrs Low Buoyancy
+0.5
-0.1
N.D.
+0.2
-0.3
auxotrophy
YNB Glucose 75mM Methionine
-0.1
+0.8
N.D.
+0.1
-0.3
auxotrophy
YNB Glucose 75mM Arginine
-0.3
+1.1
N.D.
-0.5
+0.4
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
+0.2
+0.1
N.D.
-0.0
+0.4
buoyancy on lipid accumulation
40 hrs High Buoyancy
+0.3
+0.1
N.D.
+0.3
+0.2
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+0.6
-0.1
N.D.
+0.8
-0.1
growth on ricinoleic acid
YNB Methylricinoleic Acid
+0.1
+0.4
N.D.
+0.7
+0.2
growth on ricinoleic acid
YNB Ricinoleic Acid
+0.3
+0.2
N.D.
+0.5
+0.3
growth on ricinoleic acid
YNB Glucose
+0.4
+0.3
N.D.
+0.7
+0.1
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