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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
14953 and 14954 are separated by 219 nucleotides
14954 and 14955 are separated by 1370 nucleotides
14955 and 14956 are separated by 747 nucleotides
14956 and 14957 are separated by 441 nucleotides
mRNA_6585: 14953 - K14850 RRP8 ribosomal RNA-processing protein 8, at 1,161,418 to 1,162,965
14953
mRNA_6586: 14954 - SUPERFAMILY--SSF55729, at 1,163,185 to 1,164,579
14954
mRNA_6587: 14955 - SUPERFAMILY--SSF57184, at 1,165,950 to 1,167,130
14955
mRNA_6588: 14956 - K00966 GMPP mannose-1-phosphate guanylyltransferase, at 1,167,878 to 1,169,516
14956
mRNA_6589: 14957 - K12386 CTNS cystinosin, at 1,169,958 to 1,171,396
14957
Group
Condition
mRNA
_6585
mRNA
_6586
mRNA
_6587
mRNA
_6588
mRNA
_6589
14953
14954
14955
14956
14957
ypd buoyancy
40 hrs No Buoyancy Separation
-2.4
+0.8
-0.7
N.D.
-0.6
facs on lipid accumulation
Sorted No BODIPY Gate
-0.8
-0.2
-0.2
N.D.
-0.1
facs on lipid accumulation
Sorted High BODIPY Gate
-0.7
-0.3
+0.1
N.D.
-0.2
ypd buoyancy
40 hrs Median Buoyancy
-0.6
+0.2
-0.4
N.D.
-0.2
growth on ypd
YPD
-0.4
-0.2
-0.3
N.D.
-0.0
buoyancy on lipid accumulation
40 hrs High Buoyancy
+0.2
-0.0
-0.5
N.D.
-0.5
ypd buoyancy
40 hrs High Buoyancy
-0.6
+0.2
-0.2
N.D.
-0.2
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+0.2
+0.0
-0.7
N.D.
-0.2
ypd buoyancy
40 hrs Low Buoyancy
-0.3
+0.2
-0.2
N.D.
-0.1
growth on oleic acid
YNB Glucose
-0.1
-0.2
+0.1
N.D.
-0.0
facs on lipid accumulation
Sorted Low BODIPY Gate
-0.7
+0.3
+0.3
N.D.
-0.0
growth on oleic acid
YNB Oleic Acid
+0.1
+0.0
-0.0
N.D.
-0.2
buoyancy on lipid accumulation
40 hrs Low Buoyancy
-0.1
+0.1
+0.2
N.D.
-0.2
auxotrophy
YNB Glucose
-0.1
+0.3
-0.2
N.D.
+0.1
auxotrophy
YNB Glucose 75mM Methionine
-0.3
+0.3
+0.1
N.D.
+0.2
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
+0.4
+0.1
-0.0
N.D.
-0.1
auxotrophy
YNB Glucose 75mM Arginine
+0.4
+0.2
-0.3
N.D.
+0.3
growth on ricinoleic acid
YNB Glucose
+0.1
+0.6
-0.1
N.D.
+0.2
auxotrophy
Dropout Complete
+0.5
+0.2
-0.2
N.D.
+0.3
growth on ricinoleic acid
YNB Ricinoleic Acid
+0.3
+0.6
+0.3
N.D.
+0.0
growth on ricinoleic acid
YNB Methylricinoleic Acid
+0.2
+0.5
+0.3
N.D.
+0.3
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