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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
14954 and 14955 are separated by 1370 nucleotides
14955 and 14956 are separated by 747 nucleotides
14956 and 14957 are separated by 441 nucleotides
14957 and 14958 are separated by 456 nucleotides
mRNA_6586: 14954 - SUPERFAMILY--SSF55729, at 1,163,185 to 1,164,579
14954
mRNA_6587: 14955 - SUPERFAMILY--SSF57184, at 1,165,950 to 1,167,130
14955
mRNA_6588: 14956 - K00966 GMPP mannose-1-phosphate guanylyltransferase, at 1,167,878 to 1,169,516
14956
mRNA_6589: 14957 - K12386 CTNS cystinosin, at 1,169,958 to 1,171,396
14957
mRNA_6590: 14958 - K03009 RPB12, POLR2K DNA-directed RNA polymerases I, II, and III subunit RPABC4, at 1,171,853 to 1,172,203
14958
Group
Condition
mRNA
_6586
mRNA
_6587
mRNA
_6588
mRNA
_6589
mRNA
_6590
14954
14955
14956
14957
14958
ypd buoyancy
40 hrs High Buoyancy
+0.2
-0.2
N.D.
-0.2
-1.3
buoyancy on lipid accumulation
40 hrs High Buoyancy
-0.0
-0.5
N.D.
-0.5
-0.2
facs on lipid accumulation
Sorted No BODIPY Gate
-0.2
-0.2
N.D.
-0.1
+0.1
auxotrophy
Dropout Complete
+0.2
-0.2
N.D.
+0.3
-0.8
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+0.0
-0.7
N.D.
-0.2
+0.6
facs on lipid accumulation
Sorted High BODIPY Gate
-0.3
+0.1
N.D.
-0.2
+0.3
auxotrophy
YNB Glucose 75mM Arginine
+0.2
-0.3
N.D.
+0.3
-0.3
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
+0.1
-0.0
N.D.
-0.1
+0.2
ypd buoyancy
40 hrs No Buoyancy Separation
+0.8
-0.7
N.D.
-0.6
+0.7
ypd buoyancy
40 hrs Median Buoyancy
+0.2
-0.4
N.D.
-0.2
+0.7
growth on oleic acid
YNB Glucose
-0.2
+0.1
N.D.
-0.0
+0.4
growth on ypd
YPD
-0.2
-0.3
N.D.
-0.0
+0.9
growth on ricinoleic acid
YNB Ricinoleic Acid
+0.6
+0.3
N.D.
+0.0
-0.5
auxotrophy
YNB Glucose
+0.3
-0.2
N.D.
+0.1
+0.4
ypd buoyancy
40 hrs Low Buoyancy
+0.2
-0.2
N.D.
-0.1
+0.7
growth on oleic acid
YNB Oleic Acid
+0.0
-0.0
N.D.
-0.2
+0.8
facs on lipid accumulation
Sorted Low BODIPY Gate
+0.3
+0.3
N.D.
-0.0
+0.3
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+0.1
+0.2
N.D.
-0.2
+0.8
growth on ricinoleic acid
YNB Glucose
+0.6
-0.1
N.D.
+0.2
+0.2
growth on ricinoleic acid
YNB Methylricinoleic Acid
+0.5
+0.3
N.D.
+0.3
-0.2
auxotrophy
YNB Glucose 75mM Methionine
+0.3
+0.1
N.D.
+0.2
+0.5
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