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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
14956 and 14957 are separated by 441 nucleotides
14957 and 14958 are separated by 456 nucleotides
14958 and 14959 are separated by 604 nucleotides
14959 and 14960 are separated by 356 nucleotides
mRNA_6588: 14956 - K00966 GMPP mannose-1-phosphate guanylyltransferase, at 1,167,878 to 1,169,516
14956
mRNA_6589: 14957 - K12386 CTNS cystinosin, at 1,169,958 to 1,171,396
14957
mRNA_6590: 14958 - K03009 RPB12, POLR2K DNA-directed RNA polymerases I, II, and III subunit RPABC4, at 1,171,853 to 1,172,203
14958
mRNA_6591: 14959 - K05724 FGD5_6 FYVE, RhoGEF and PH domain containing 5/6, at 1,172,808 to 1,176,820
14959
mRNA_6592: 14960 - KOG2571 Chitin synthase/hyaluronan synthase (glycosyltransferases), at 1,177,177 to 1,181,389
14960
Group
Condition
mRNA
_6588
mRNA
_6589
mRNA
_6590
mRNA
_6591
mRNA
_6592
14956
14957
14958
14959
14960
ypd buoyancy
40 hrs High Buoyancy
N.D.
-0.2
-1.3
+0.1
-0.2
growth on ricinoleic acid
YNB Ricinoleic Acid
N.D.
+0.0
-0.5
+0.2
-1.1
buoyancy on lipid accumulation
40 hrs High Buoyancy
N.D.
-0.5
-0.2
+0.1
-0.0
ypd buoyancy
40 hrs No Buoyancy Separation
N.D.
-0.6
+0.7
-0.1
-0.4
auxotrophy
YNB Glucose 75mM Arginine
N.D.
+0.3
-0.3
+0.1
-0.5
facs on lipid accumulation
Sorted Low BODIPY Gate
N.D.
-0.0
+0.3
-0.2
-0.2
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
N.D.
-0.1
+0.2
-0.0
-0.2
auxotrophy
Dropout Complete
N.D.
+0.3
-0.8
+0.1
+0.2
facs on lipid accumulation
Sorted High BODIPY Gate
N.D.
-0.2
+0.3
-0.1
-0.2
growth on oleic acid
YNB Glucose
N.D.
-0.0
+0.4
+0.1
-0.6
facs on lipid accumulation
Sorted No BODIPY Gate
N.D.
-0.1
+0.1
-0.1
+0.1
growth on ricinoleic acid
YNB Methylricinoleic Acid
N.D.
+0.3
-0.2
+0.4
-0.5
auxotrophy
YNB Glucose 75mM Methionine
N.D.
+0.2
+0.5
+0.0
-0.6
auxotrophy
YNB Glucose
N.D.
+0.1
+0.4
+0.1
-0.5
buoyancy on lipid accumulation
40 hrs Median Buoyancy
N.D.
-0.2
+0.6
-0.1
-0.0
growth on ricinoleic acid
YNB Glucose
N.D.
+0.2
+0.2
+0.1
-0.2
buoyancy on lipid accumulation
40 hrs Low Buoyancy
N.D.
-0.2
+0.8
+0.0
-0.1
growth on ypd
YPD
N.D.
-0.0
+0.9
-0.1
-0.2
ypd buoyancy
40 hrs Median Buoyancy
N.D.
-0.2
+0.7
+0.1
+0.1
ypd buoyancy
40 hrs Low Buoyancy
N.D.
-0.1
+0.7
+0.2
+0.2
growth on oleic acid
YNB Oleic Acid
N.D.
-0.2
+0.8
+0.4
+0.4
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