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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
14957 and 14958 are separated by 456 nucleotides
14958 and 14959 are separated by 604 nucleotides
14959 and 14960 are separated by 356 nucleotides
14960 and 14961 are separated by 544 nucleotides
mRNA_6589: 14957 - K12386 CTNS cystinosin, at 1,169,958 to 1,171,396
14957
mRNA_6590: 14958 - K03009 RPB12, POLR2K DNA-directed RNA polymerases I, II, and III subunit RPABC4, at 1,171,853 to 1,172,203
14958
mRNA_6591: 14959 - K05724 FGD5_6 FYVE, RhoGEF and PH domain containing 5/6, at 1,172,808 to 1,176,820
14959
mRNA_6592: 14960 - KOG2571 Chitin synthase/hyaluronan synthase (glycosyltransferases), at 1,177,177 to 1,181,389
14960
mRNA_6593: 14961 - KOG1616 Protein involved in Snf1 protein kinase complex assembly, at 1,181,934 to 1,184,760
14961
Group
Condition
mRNA
_6589
mRNA
_6590
mRNA
_6591
mRNA
_6592
mRNA
_6593
14957
14958
14959
14960
14961
ypd buoyancy
40 hrs High Buoyancy
-0.2
-1.3
+0.1
-0.2
+0.1
growth on ricinoleic acid
YNB Ricinoleic Acid
+0.0
-0.5
+0.2
-1.1
+0.4
buoyancy on lipid accumulation
40 hrs High Buoyancy
-0.5
-0.2
+0.1
-0.0
-0.0
facs on lipid accumulation
Sorted Low BODIPY Gate
-0.0
+0.3
-0.2
-0.2
-0.4
ypd buoyancy
40 hrs No Buoyancy Separation
-0.6
+0.7
-0.1
-0.4
-0.2
facs on lipid accumulation
Sorted High BODIPY Gate
-0.2
+0.3
-0.1
-0.2
-0.2
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-0.1
+0.2
-0.0
-0.2
-0.1
facs on lipid accumulation
Sorted No BODIPY Gate
-0.1
+0.1
-0.1
+0.1
-0.1
growth on oleic acid
YNB Glucose
-0.0
+0.4
+0.1
-0.6
+0.1
buoyancy on lipid accumulation
40 hrs Median Buoyancy
-0.2
+0.6
-0.1
-0.0
-0.1
auxotrophy
YNB Glucose 75mM Arginine
+0.3
-0.3
+0.1
-0.5
+0.4
auxotrophy
YNB Glucose
+0.1
+0.4
+0.1
-0.5
+0.3
auxotrophy
YNB Glucose 75mM Methionine
+0.2
+0.5
+0.0
-0.6
+0.4
buoyancy on lipid accumulation
40 hrs Low Buoyancy
-0.2
+0.8
+0.0
-0.1
-0.0
auxotrophy
Dropout Complete
+0.3
-0.8
+0.1
+0.2
+0.7
growth on ypd
YPD
-0.0
+0.9
-0.1
-0.2
-0.0
growth on ricinoleic acid
YNB Methylricinoleic Acid
+0.3
-0.2
+0.4
-0.5
+0.7
ypd buoyancy
40 hrs Median Buoyancy
-0.2
+0.7
+0.1
+0.1
+0.1
ypd buoyancy
40 hrs Low Buoyancy
-0.1
+0.7
+0.2
+0.2
+0.1
growth on ricinoleic acid
YNB Glucose
+0.2
+0.2
+0.1
-0.2
+0.7
growth on oleic acid
YNB Oleic Acid
-0.2
+0.8
+0.4
+0.4
+0.1
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