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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
14965 and 14966 are separated by 171 nucleotides
14966 and 14967 are separated by 63 nucleotides
14967 and 14968 are separated by 1495 nucleotides
14968 and 14969 are separated by 783 nucleotides
mRNA_6597: 14965 - KOG2458 Endoplasmic reticulum protein EP58, contains filamin rod domain and KDEL motif, at 1,190,168 to 1,192,738
14965
mRNA_6598: 14966 - K11518 TOM40 mitochondrial import receptor subunit TOM40, at 1,192,910 to 1,194,373
14966
mRNA_6599: 14967 - Hypothetical Protein, at 1,194,437 to 1,195,925
14967
mRNA_6600: 14968 - Hypothetical Protein, at 1,197,421 to 1,199,600
14968
mRNA_6601: 14969 - K04512 DAAM dishevelled associated activator of morphogenesis, at 1,200,384 to 1,206,346
14969
Group
Condition
mRNA
_6597
mRNA
_6598
mRNA
_6599
mRNA
_6600
mRNA
_6601
14965
14966
14967
14968
14969
buoyancy on lipid accumulation
40 hrs High Buoyancy
-0.2
N.D.
-0.2
-0.1
-0.7
facs on lipid accumulation
Sorted Low BODIPY Gate
+0.2
N.D.
-0.0
-0.5
-0.6
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+0.2
N.D.
-0.3
-0.1
-0.5
ypd buoyancy
40 hrs Median Buoyancy
-0.1
N.D.
-0.3
-0.2
+0.0
auxotrophy
YNB Glucose
+0.2
N.D.
-0.2
-0.3
-0.3
growth on ypd
YPD
+0.0
N.D.
-0.1
-0.3
-0.1
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
+0.3
N.D.
-0.6
+0.2
-0.3
auxotrophy
YNB Glucose 75mM Methionine
+0.2
N.D.
-0.1
-0.1
-0.3
growth on oleic acid
YNB Glucose
+0.2
N.D.
-0.5
+0.0
-0.1
auxotrophy
YNB Glucose 75mM Arginine
+0.1
N.D.
-0.1
+0.0
-0.4
buoyancy on lipid accumulation
40 hrs Median Buoyancy
-0.1
N.D.
-0.1
+0.3
-0.3
facs on lipid accumulation
Sorted High BODIPY Gate
-0.1
N.D.
-0.2
-0.4
+0.6
growth on ricinoleic acid
YNB Methylricinoleic Acid
+0.1
N.D.
+0.2
-0.2
-0.2
growth on ricinoleic acid
YNB Glucose
+0.0
N.D.
+0.4
-0.3
-0.1
facs on lipid accumulation
Sorted No BODIPY Gate
+0.1
N.D.
-0.2
-0.1
+0.3
ypd buoyancy
40 hrs High Buoyancy
+0.1
N.D.
+0.1
-0.1
-0.0
auxotrophy
Dropout Complete
+0.1
N.D.
+0.0
+0.1
+0.1
growth on oleic acid
YNB Oleic Acid
+0.4
N.D.
-0.4
+0.0
+0.3
growth on ricinoleic acid
YNB Ricinoleic Acid
-0.2
N.D.
+0.3
+0.3
+0.0
ypd buoyancy
40 hrs No Buoyancy Separation
+0.2
N.D.
+0.3
+0.2
-0.1
ypd buoyancy
40 hrs Low Buoyancy
+0.1
N.D.
+0.0
-0.1
+0.6
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