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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
14968 and 14969 are separated by 783 nucleotides
14969 and 14970 are separated by 468 nucleotides
14970 and 14971 are separated by 416 nucleotides
14971 and 14972 are separated by 214 nucleotides
mRNA_6600: 14968 - Hypothetical Protein, at 1,197,421 to 1,199,600
14968
mRNA_6601: 14969 - K04512 DAAM dishevelled associated activator of morphogenesis, at 1,200,384 to 1,206,346
14969
mRNA_6602: 14970 - K07953 SAR1 GTP-binding protein SAR1, at 1,206,815 to 1,208,411
14970
mRNA_6603: 14971 - K02149 ATPeV1D, ATP6M V-type H+-transporting ATPase subunit D, at 1,208,828 to 1,210,295
14971
mRNA_6604: 14972 - K12812 UAP56, BAT1, SUB2 ATP-dependent RNA helicase UAP56/SUB2, at 1,210,510 to 1,213,080
14972
Group
Condition
mRNA
_6600
mRNA
_6601
mRNA
_6602
mRNA
_6603
mRNA
_6604
14968
14969
14970
14971
14972
facs on lipid accumulation
Sorted Low BODIPY Gate
-0.5
-0.6
N.D.
N.D.
N.D.
buoyancy on lipid accumulation
40 hrs High Buoyancy
-0.1
-0.7
N.D.
N.D.
N.D.
buoyancy on lipid accumulation
40 hrs Low Buoyancy
-0.1
-0.5
N.D.
N.D.
N.D.
auxotrophy
YNB Glucose
-0.3
-0.3
N.D.
N.D.
N.D.
auxotrophy
YNB Glucose 75mM Methionine
-0.1
-0.3
N.D.
N.D.
N.D.
growth on ricinoleic acid
YNB Glucose
-0.3
-0.1
N.D.
N.D.
N.D.
growth on ypd
YPD
-0.3
-0.1
N.D.
N.D.
N.D.
growth on ricinoleic acid
YNB Methylricinoleic Acid
-0.2
-0.2
N.D.
N.D.
N.D.
auxotrophy
YNB Glucose 75mM Arginine
+0.0
-0.4
N.D.
N.D.
N.D.
ypd buoyancy
40 hrs Median Buoyancy
-0.2
+0.0
N.D.
N.D.
N.D.
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
+0.2
-0.3
N.D.
N.D.
N.D.
ypd buoyancy
40 hrs High Buoyancy
-0.1
-0.0
N.D.
N.D.
N.D.
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+0.3
-0.3
N.D.
N.D.
N.D.
growth on oleic acid
YNB Glucose
+0.0
-0.1
N.D.
N.D.
N.D.
ypd buoyancy
40 hrs No Buoyancy Separation
+0.2
-0.1
N.D.
N.D.
N.D.
facs on lipid accumulation
Sorted High BODIPY Gate
-0.4
+0.6
N.D.
N.D.
N.D.
auxotrophy
Dropout Complete
+0.1
+0.1
N.D.
N.D.
N.D.
facs on lipid accumulation
Sorted No BODIPY Gate
-0.1
+0.3
N.D.
N.D.
N.D.
growth on ricinoleic acid
YNB Ricinoleic Acid
+0.3
+0.0
N.D.
N.D.
N.D.
growth on oleic acid
YNB Oleic Acid
+0.0
+0.3
N.D.
N.D.
N.D.
ypd buoyancy
40 hrs Low Buoyancy
-0.1
+0.6
N.D.
N.D.
N.D.
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