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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
14973 and 14974 are separated by 91 nucleotides
14974 and 14975 are separated by 348 nucleotides
14975 and 14976 are separated by 176 nucleotides
14976 and 14977 are separated by 621 nucleotides
mRNA_6605: 14973 - KOG2177 Predicted E3 ubiquitin ligase, at 1,213,438 to 1,216,130
14973
mRNA_6606: 14974 - KOG2761 START domain-containing proteins involved in steroidogenesis/phosphatidylcholine transfer, at 1,216,222 to 1,217,950
14974
mRNA_6607: 14975 - K14572 MDN1, REA1 midasin, at 1,218,299 to 1,235,391
14975
mRNA_6608: 14976 - HMMPfam-Yqey-like protein-PF09424,SUPERFAMILY--SSF89095, at 1,235,568 to 1,236,163
14976
mRNA_6609: 14977 - KOG1232 Proteins containing the FAD binding domain, at 1,236,785 to 1,239,365
14977
Group
Condition
mRNA
_6605
mRNA
_6606
mRNA
_6607
mRNA
_6608
mRNA
_6609
14973
14974
14975
14976
14977
facs on lipid accumulation
Sorted High BODIPY Gate
-0.2
-0.7
N.D.
-1.0
-0.5
growth on ricinoleic acid
YNB Methylricinoleic Acid
-0.6
-0.1
N.D.
-0.6
-0.1
growth on ypd
YPD
-0.1
-0.1
N.D.
-0.2
-0.8
auxotrophy
YNB Glucose 75mM Arginine
-0.3
-0.2
N.D.
-0.4
-0.2
growth on oleic acid
YNB Glucose
-0.2
-0.6
N.D.
-0.1
+0.0
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+0.1
-0.7
N.D.
+0.0
+0.0
buoyancy on lipid accumulation
40 hrs Low Buoyancy
-0.1
-0.4
N.D.
-0.1
+0.0
auxotrophy
YNB Glucose
-0.1
-0.2
N.D.
+0.0
-0.2
growth on ricinoleic acid
YNB Glucose
-0.1
-0.6
N.D.
-0.1
+0.4
buoyancy on lipid accumulation
40 hrs High Buoyancy
+0.2
-0.6
N.D.
+0.3
-0.2
facs on lipid accumulation
Sorted No BODIPY Gate
-0.3
+0.4
N.D.
-0.4
-0.0
growth on oleic acid
YNB Oleic Acid
-0.0
+0.0
N.D.
-0.2
-0.1
auxotrophy
Dropout Complete
-0.2
+0.1
N.D.
-0.3
+0.0
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
+0.0
-0.6
N.D.
+0.5
-0.2
growth on ricinoleic acid
YNB Ricinoleic Acid
-0.1
-0.0
N.D.
-0.4
+0.4
auxotrophy
YNB Glucose 75mM Methionine
+0.1
+0.1
N.D.
+0.0
-0.1
facs on lipid accumulation
Sorted Low BODIPY Gate
+0.0
+0.5
N.D.
-0.0
-0.1
ypd buoyancy
40 hrs Low Buoyancy
+0.1
+0.3
N.D.
+0.1
+0.2
ypd buoyancy
40 hrs Median Buoyancy
-0.1
+0.2
N.D.
+0.3
+0.5
ypd buoyancy
40 hrs High Buoyancy
-0.3
+0.1
N.D.
+0.6
+0.5
ypd buoyancy
40 hrs No Buoyancy Separation
+0.1
+0.3
N.D.
+1.0
+0.2
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