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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
14974 and 14975 are separated by 348 nucleotides
14975 and 14976 are separated by 176 nucleotides
14976 and 14977 are separated by 621 nucleotides
14977 and 14978 are separated by 194 nucleotides
mRNA_6606: 14974 - KOG2761 START domain-containing proteins involved in steroidogenesis/phosphatidylcholine transfer, at 1,216,222 to 1,217,950
14974
mRNA_6607: 14975 - K14572 MDN1, REA1 midasin, at 1,218,299 to 1,235,391
14975
mRNA_6608: 14976 - HMMPfam-Yqey-like protein-PF09424,SUPERFAMILY--SSF89095, at 1,235,568 to 1,236,163
14976
mRNA_6609: 14977 - KOG1232 Proteins containing the FAD binding domain, at 1,236,785 to 1,239,365
14977
mRNA_6610: 14978 - BLAST related to MSL5-branch point bridging protein [Sporis..., at 1,239,560 to 1,240,604
14978
Group
Condition
mRNA
_6606
mRNA
_6607
mRNA
_6608
mRNA
_6609
mRNA
_6610
14974
14975
14976
14977
14978
growth on ypd
YPD
-0.1
N.D.
-0.2
-0.8
-1.8
facs on lipid accumulation
Sorted High BODIPY Gate
-0.7
N.D.
-1.0
-0.5
-0.2
auxotrophy
YNB Glucose 75mM Arginine
-0.2
N.D.
-0.4
-0.2
-0.9
growth on ricinoleic acid
YNB Methylricinoleic Acid
-0.1
N.D.
-0.6
-0.1
+0.1
growth on ricinoleic acid
YNB Glucose
-0.6
N.D.
-0.1
+0.4
-0.1
auxotrophy
YNB Glucose
-0.2
N.D.
+0.0
-0.2
+0.1
buoyancy on lipid accumulation
40 hrs Median Buoyancy
-0.7
N.D.
+0.0
+0.0
+0.4
ypd buoyancy
40 hrs Low Buoyancy
+0.3
N.D.
+0.1
+0.2
-0.7
growth on ricinoleic acid
YNB Ricinoleic Acid
-0.0
N.D.
-0.4
+0.4
+0.0
buoyancy on lipid accumulation
40 hrs Low Buoyancy
-0.4
N.D.
-0.1
+0.0
+0.6
auxotrophy
Dropout Complete
+0.1
N.D.
-0.3
+0.0
+0.3
buoyancy on lipid accumulation
40 hrs High Buoyancy
-0.6
N.D.
+0.3
-0.2
+0.8
facs on lipid accumulation
Sorted No BODIPY Gate
+0.4
N.D.
-0.4
-0.0
+0.3
growth on oleic acid
YNB Glucose
-0.6
N.D.
-0.1
+0.0
+0.9
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-0.6
N.D.
+0.5
-0.2
+0.7
growth on oleic acid
YNB Oleic Acid
+0.0
N.D.
-0.2
-0.1
+0.8
ypd buoyancy
40 hrs High Buoyancy
+0.1
N.D.
+0.6
+0.5
-0.8
auxotrophy
YNB Glucose 75mM Methionine
+0.1
N.D.
+0.0
-0.1
+0.4
facs on lipid accumulation
Sorted Low BODIPY Gate
+0.5
N.D.
-0.0
-0.1
+0.3
ypd buoyancy
40 hrs No Buoyancy Separation
+0.3
N.D.
+1.0
+0.2
-0.5
ypd buoyancy
40 hrs Median Buoyancy
+0.2
N.D.
+0.3
+0.5
+0.1
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