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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
14978 and 14979 are separated by 330 nucleotides
14979 and 14980 are separated by 110 nucleotides
14980 and 14981 are separated by 559 nucleotides
14981 and 14982 are separated by 474 nucleotides
mRNA_6610: 14978 - BLAST related to MSL5-branch point bridging protein [Sporis..., at 1,239,560 to 1,240,604
14978
mRNA_6611: 14979 - K03849 ALG8 alpha-1,3-glucosyltransferase, at 1,240,935 to 1,243,204
14979
mRNA_6612: 14980 - Hypothetical Protein, at 1,243,315 to 1,245,025
14980
mRNA_6613: 14981 - K08740 MSH4 DNA mismatch repair protein MSH4, at 1,245,585 to 1,249,013
14981
mRNA_6614: 14982 - HMMPfam-MRC1-like domain-PF09444, at 1,249,488 to 1,254,442
14982
Group
Condition
mRNA
_6610
mRNA
_6611
mRNA
_6612
mRNA
_6613
mRNA
_6614
14978
14979
14980
14981
14982
auxotrophy
YNB Glucose 75mM Arginine
-0.9
-0.1
+0.1
-0.3
-0.6
facs on lipid accumulation
Sorted Low BODIPY Gate
+0.3
-0.3
-0.3
+0.1
-1.6
growth on ypd
YPD
-1.8
-0.3
+0.3
-0.0
+0.4
facs on lipid accumulation
Sorted High BODIPY Gate
-0.2
-0.6
-0.4
+0.0
-0.1
auxotrophy
YNB Glucose
+0.1
+0.1
-0.1
-0.3
-1.0
ypd buoyancy
40 hrs Low Buoyancy
-0.7
+0.2
-0.1
-0.1
-0.1
ypd buoyancy
40 hrs No Buoyancy Separation
-0.5
+0.3
-0.1
+0.5
-1.0
growth on ricinoleic acid
YNB Glucose
-0.1
-0.1
+0.3
-0.3
-0.3
auxotrophy
YNB Glucose 75mM Methionine
+0.4
-0.2
-0.0
-0.3
-0.1
ypd buoyancy
40 hrs High Buoyancy
-0.8
+0.1
-0.1
+0.3
+0.2
growth on oleic acid
YNB Glucose
+0.9
-0.3
+0.2
-0.2
-0.4
facs on lipid accumulation
Sorted No BODIPY Gate
+0.3
-0.2
-0.2
-0.0
+0.4
growth on ricinoleic acid
YNB Ricinoleic Acid
+0.0
-0.4
+1.0
+0.0
-0.3
auxotrophy
Dropout Complete
+0.3
-0.1
+0.3
-0.1
+0.1
ypd buoyancy
40 hrs Median Buoyancy
+0.1
-0.0
+0.0
+0.2
+0.6
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
+0.7
+0.5
+0.3
-0.0
-0.5
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+0.4
+0.1
+0.4
+0.3
-0.0
buoyancy on lipid accumulation
40 hrs High Buoyancy
+0.8
+0.1
+0.2
+0.5
-0.0
growth on ricinoleic acid
YNB Methylricinoleic Acid
+0.1
-0.0
+0.9
-0.1
+0.6
growth on oleic acid
YNB Oleic Acid
+0.8
-0.0
+0.6
+0.1
+0.3
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+0.6
+0.6
+0.4
+0.5
+0.3
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