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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
14982 and 14983 are separated by 89 nucleotides
14983 and 14984 are separated by 320 nucleotides
14984 and 14985 are separated by 239 nucleotides
14985 and 14986 are separated by 2015 nucleotides
mRNA_6614: 14982 - HMMPfam-MRC1-like domain-PF09444, at 1,249,488 to 1,254,442
14982
mRNA_6615: 14983 - Hypothetical Protein, at 1,254,532 to 1,256,049
14983
mRNA_6616: 14984 - Hypothetical Protein, at 1,256,370 to 1,257,792
14984
mRNA_6617: 14985 - K15544 SSU72 RNA polymerase II subunit A C-terminal domain phosphatase SSU72, at 1,258,032 to 1,259,206
14985
mRNA_6618: 14986 - KOG0627 Heat shock transcription factor, at 1,261,222 to 1,263,169
14986
Group
Condition
mRNA
_6614
mRNA
_6615
mRNA
_6616
mRNA
_6617
mRNA
_6618
14982
14983
14984
14985
14986
facs on lipid accumulation
Sorted High BODIPY Gate
-0.1
-0.5
-1.3
-0.7
-0.1
ypd buoyancy
40 hrs No Buoyancy Separation
-1.0
-0.5
-0.7
-0.4
+0.2
facs on lipid accumulation
Sorted Low BODIPY Gate
-1.6
-0.2
-1.0
+0.6
-0.0
auxotrophy
YNB Glucose 75mM Arginine
-0.6
-0.1
-0.3
-0.2
-0.6
auxotrophy
YNB Glucose
-1.0
+0.2
-0.3
-0.1
-0.2
growth on oleic acid
YNB Glucose
-0.4
+0.0
-0.2
-0.5
-0.1
auxotrophy
Dropout Complete
+0.1
-0.2
-0.4
-0.4
-0.2
growth on ricinoleic acid
YNB Ricinoleic Acid
-0.3
+0.1
-0.0
-0.3
+0.4
growth on ricinoleic acid
YNB Glucose
-0.3
+0.0
+0.1
-0.0
+0.0
ypd buoyancy
40 hrs Low Buoyancy
-0.1
+0.2
+0.3
-0.5
-0.0
auxotrophy
YNB Glucose 75mM Methionine
-0.1
+0.3
+0.1
+0.0
-0.3
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-0.5
+0.3
+0.5
-0.1
-0.1
facs on lipid accumulation
Sorted No BODIPY Gate
+0.4
+0.2
-0.7
+0.3
-0.0
ypd buoyancy
40 hrs High Buoyancy
+0.2
+0.1
+0.2
-0.2
-0.1
buoyancy on lipid accumulation
40 hrs High Buoyancy
-0.0
+0.3
-0.2
+0.3
-0.0
ypd buoyancy
40 hrs Median Buoyancy
+0.6
+0.1
+0.4
-0.5
-0.2
growth on ricinoleic acid
YNB Methylricinoleic Acid
+0.6
+0.1
-0.4
+0.2
-0.1
growth on oleic acid
YNB Oleic Acid
+0.3
-0.0
+0.1
-0.1
+0.2
buoyancy on lipid accumulation
40 hrs Median Buoyancy
-0.0
+0.2
-0.1
+0.4
+0.0
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+0.3
+0.5
+0.2
+0.5
+0.2
growth on ypd
YPD
+0.4
+1.0
+0.6
+0.4
+0.3
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