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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
14984 and 14985 are separated by 239 nucleotides
14985 and 14986 are separated by 2015 nucleotides
14986 and 14987 are separated by 1279 nucleotides
14987 and 14988 are separated by 564 nucleotides
mRNA_6616: 14984 - Hypothetical Protein, at 1,256,370 to 1,257,792
14984
mRNA_6617: 14985 - K15544 SSU72 RNA polymerase II subunit A C-terminal domain phosphatase SSU72, at 1,258,032 to 1,259,206
14985
mRNA_6618: 14986 - KOG0627 Heat shock transcription factor, at 1,261,222 to 1,263,169
14986
mRNA_6619: 14987 - KOG0092 GTPase Rab5/YPT51 and related small G protein superfamily GTPases, at 1,264,449 to 1,266,706
14987
mRNA_6620: 14988 - K02935 RP-L7, MRPL12, rplL large subunit ribosomal protein L7/L12, at 1,267,271 to 1,267,860
14988
Group
Condition
mRNA
_6616
mRNA
_6617
mRNA
_6618
mRNA
_6619
mRNA
_6620
14984
14985
14986
14987
14988
facs on lipid accumulation
Sorted High BODIPY Gate
-1.3
-0.7
-0.1
+0.2
N.D.
auxotrophy
YNB Glucose 75mM Arginine
-0.3
-0.2
-0.6
-0.3
N.D.
auxotrophy
Dropout Complete
-0.4
-0.4
-0.2
-0.4
N.D.
ypd buoyancy
40 hrs No Buoyancy Separation
-0.7
-0.4
+0.2
-0.3
N.D.
auxotrophy
YNB Glucose
-0.3
-0.1
-0.2
-0.3
N.D.
growth on oleic acid
YNB Glucose
-0.2
-0.5
-0.1
+0.1
N.D.
ypd buoyancy
40 hrs Median Buoyancy
+0.4
-0.5
-0.2
-0.2
N.D.
ypd buoyancy
40 hrs High Buoyancy
+0.2
-0.2
-0.1
-0.3
N.D.
growth on ricinoleic acid
YNB Methylricinoleic Acid
-0.4
+0.2
-0.1
-0.1
N.D.
auxotrophy
YNB Glucose 75mM Methionine
+0.1
+0.0
-0.3
-0.1
N.D.
facs on lipid accumulation
Sorted Low BODIPY Gate
-1.0
+0.6
-0.0
+0.1
N.D.
ypd buoyancy
40 hrs Low Buoyancy
+0.3
-0.5
-0.0
-0.1
N.D.
facs on lipid accumulation
Sorted No BODIPY Gate
-0.7
+0.3
-0.0
+0.2
N.D.
growth on ricinoleic acid
YNB Ricinoleic Acid
-0.0
-0.3
+0.4
-0.0
N.D.
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
+0.5
-0.1
-0.1
-0.2
N.D.
buoyancy on lipid accumulation
40 hrs Median Buoyancy
-0.1
+0.4
+0.0
-0.1
N.D.
buoyancy on lipid accumulation
40 hrs High Buoyancy
-0.2
+0.3
-0.0
+0.1
N.D.
growth on ricinoleic acid
YNB Glucose
+0.1
-0.0
+0.0
+0.1
N.D.
growth on oleic acid
YNB Oleic Acid
+0.1
-0.1
+0.2
+0.2
N.D.
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+0.2
+0.5
+0.2
-0.3
N.D.
growth on ypd
YPD
+0.6
+0.4
+0.3
+0.2
N.D.
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