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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
14985 and 14986 are separated by 2015 nucleotides
14986 and 14987 are separated by 1279 nucleotides
14987 and 14988 are separated by 564 nucleotides
14988 and 14989 are separated by 560 nucleotides
mRNA_6617: 14985 - K15544 SSU72 RNA polymerase II subunit A C-terminal domain phosphatase SSU72, at 1,258,032 to 1,259,206
14985
mRNA_6618: 14986 - KOG0627 Heat shock transcription factor, at 1,261,222 to 1,263,169
14986
mRNA_6619: 14987 - KOG0092 GTPase Rab5/YPT51 and related small G protein superfamily GTPases, at 1,264,449 to 1,266,706
14987
mRNA_6620: 14988 - K02935 RP-L7, MRPL12, rplL large subunit ribosomal protein L7/L12, at 1,267,271 to 1,267,860
14988
mRNA_6621: 14989 - Hypothetical Protein, at 1,268,421 to 1,270,121
14989
Group
Condition
mRNA
_6617
mRNA
_6618
mRNA
_6619
mRNA
_6620
mRNA
_6621
14985
14986
14987
14988
14989
ypd buoyancy
40 hrs Median Buoyancy
-0.5
-0.2
-0.2
N.D.
-0.3
ypd buoyancy
40 hrs High Buoyancy
-0.2
-0.1
-0.3
N.D.
-0.2
auxotrophy
Dropout Complete
-0.4
-0.2
-0.4
N.D.
+0.2
auxotrophy
YNB Glucose 75mM Arginine
-0.2
-0.6
-0.3
N.D.
+0.4
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-0.1
-0.1
-0.2
N.D.
-0.3
ypd buoyancy
40 hrs No Buoyancy Separation
-0.4
+0.2
-0.3
N.D.
-0.2
facs on lipid accumulation
Sorted High BODIPY Gate
-0.7
-0.1
+0.2
N.D.
+0.0
ypd buoyancy
40 hrs Low Buoyancy
-0.5
-0.0
-0.1
N.D.
+0.0
growth on ricinoleic acid
YNB Ricinoleic Acid
-0.3
+0.4
-0.0
N.D.
-0.4
growth on oleic acid
YNB Glucose
-0.5
-0.1
+0.1
N.D.
+0.2
auxotrophy
YNB Glucose
-0.1
-0.2
-0.3
N.D.
+0.4
growth on ricinoleic acid
YNB Methylricinoleic Acid
+0.2
-0.1
-0.1
N.D.
-0.2
auxotrophy
YNB Glucose 75mM Methionine
+0.0
-0.3
-0.1
N.D.
+0.3
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+0.4
+0.0
-0.1
N.D.
-0.3
buoyancy on lipid accumulation
40 hrs High Buoyancy
+0.3
-0.0
+0.1
N.D.
-0.2
growth on ricinoleic acid
YNB Glucose
-0.0
+0.0
+0.1
N.D.
+0.1
facs on lipid accumulation
Sorted Low BODIPY Gate
+0.6
-0.0
+0.1
N.D.
-0.3
facs on lipid accumulation
Sorted No BODIPY Gate
+0.3
-0.0
+0.2
N.D.
-0.0
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+0.5
+0.2
-0.3
N.D.
+0.2
growth on ypd
YPD
+0.4
+0.3
+0.2
N.D.
-0.2
growth on oleic acid
YNB Oleic Acid
-0.1
+0.2
+0.2
N.D.
+0.3
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