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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
14991 and 14992 are separated by 320 nucleotides
14992 and 14993 are separated by 118 nucleotides
14993 and 14994 are separated by 377 nucleotides
14994 and 14995 are separated by 728 nucleotides
mRNA_6623: 14991 - Hypothetical Protein, at 1,272,208 to 1,273,680
14991
mRNA_6624: 14992 - Hypothetical Protein, at 1,274,001 to 1,275,291
14992
mRNA_6625: 14993 - KOG0446 Vacuolar sorting protein VPS1, dynamin, and related proteins, at 1,275,410 to 1,278,515
14993
mRNA_6626: 14994 - Hypothetical Protein, at 1,278,893 to 1,279,645
14994
mRNA_6627: 14995 - KOG1114 Tripeptidyl peptidase II, at 1,280,374 to 1,283,965
14995
Group
Condition
mRNA
_6623
mRNA
_6624
mRNA
_6625
mRNA
_6626
mRNA
_6627
14991
14992
14993
14994
14995
ypd buoyancy
40 hrs No Buoyancy Separation
-0.3
-0.1
+0.5
-1.7
-0.0
buoyancy on lipid accumulation
40 hrs High Buoyancy
-0.4
-0.3
-0.0
-1.0
+0.1
growth on oleic acid
YNB Oleic Acid
-0.3
+0.0
+0.1
-0.8
+0.1
facs on lipid accumulation
Sorted Low BODIPY Gate
-0.2
-0.0
+0.0
-0.7
+0.1
growth on ricinoleic acid
YNB Ricinoleic Acid
+0.2
+0.0
+0.1
-0.6
-0.3
facs on lipid accumulation
Sorted High BODIPY Gate
-0.0
+0.3
-0.1
-0.6
-0.1
growth on ricinoleic acid
YNB Glucose
+0.1
+0.0
+0.1
-0.3
-0.3
growth on oleic acid
YNB Glucose
-0.0
-0.2
-0.1
-0.2
+0.1
auxotrophy
YNB Glucose 75mM Arginine
-0.3
-0.1
+0.1
-0.2
-0.0
growth on ricinoleic acid
YNB Methylricinoleic Acid
+0.1
-0.0
+0.2
-0.3
-0.3
facs on lipid accumulation
Sorted No BODIPY Gate
-0.2
-0.1
+0.2
-0.5
+0.4
ypd buoyancy
40 hrs Low Buoyancy
+0.2
-0.2
+0.1
-0.2
-0.0
buoyancy on lipid accumulation
40 hrs Median Buoyancy
-0.0
-0.1
+0.0
-0.0
-0.0
auxotrophy
Dropout Complete
-0.2
-0.2
+0.0
+0.5
-0.2
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+0.0
-0.3
+0.2
-0.2
+0.2
auxotrophy
YNB Glucose 75mM Methionine
-0.1
-0.1
+0.2
+0.1
+0.0
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-0.1
+0.1
+0.3
-0.2
+0.0
ypd buoyancy
40 hrs High Buoyancy
+0.4
+0.0
+0.2
-0.2
-0.0
growth on ypd
YPD
-0.5
+0.6
+0.1
+0.3
-0.1
auxotrophy
YNB Glucose
+0.1
+0.1
+0.2
+0.3
-0.1
ypd buoyancy
40 hrs Median Buoyancy
+0.3
-0.1
+0.2
+0.2
-0.1
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