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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
14992 and 14993 are separated by 118 nucleotides
14993 and 14994 are separated by 377 nucleotides
14994 and 14995 are separated by 728 nucleotides
14995 and 14996 are separated by 199 nucleotides
mRNA_6624: 14992 - Hypothetical Protein, at 1,274,001 to 1,275,291
14992
mRNA_6625: 14993 - KOG0446 Vacuolar sorting protein VPS1, dynamin, and related proteins, at 1,275,410 to 1,278,515
14993
mRNA_6626: 14994 - Hypothetical Protein, at 1,278,893 to 1,279,645
14994
mRNA_6627: 14995 - KOG1114 Tripeptidyl peptidase II, at 1,280,374 to 1,283,965
14995
mRNA_6628: 14996 - KOG0446 Vacuolar sorting protein VPS1, dynamin, and related proteins, at 1,284,165 to 1,286,987
14996
Group
Condition
mRNA
_6624
mRNA
_6625
mRNA
_6626
mRNA
_6627
mRNA
_6628
14992
14993
14994
14995
14996
ypd buoyancy
40 hrs No Buoyancy Separation
-0.1
+0.5
-1.7
-0.0
-0.3
buoyancy on lipid accumulation
40 hrs High Buoyancy
-0.3
-0.0
-1.0
+0.1
-0.0
facs on lipid accumulation
Sorted Low BODIPY Gate
-0.0
+0.0
-0.7
+0.1
-0.2
growth on ricinoleic acid
YNB Ricinoleic Acid
+0.0
+0.1
-0.6
-0.3
+0.2
facs on lipid accumulation
Sorted High BODIPY Gate
+0.3
-0.1
-0.6
-0.1
-0.1
growth on oleic acid
YNB Oleic Acid
+0.0
+0.1
-0.8
+0.1
+0.0
growth on ricinoleic acid
YNB Glucose
+0.0
+0.1
-0.3
-0.3
+0.1
ypd buoyancy
40 hrs Low Buoyancy
-0.2
+0.1
-0.2
-0.0
-0.0
growth on oleic acid
YNB Glucose
-0.2
-0.1
-0.2
+0.1
+0.1
growth on ricinoleic acid
YNB Methylricinoleic Acid
-0.0
+0.2
-0.3
-0.3
+0.3
buoyancy on lipid accumulation
40 hrs Median Buoyancy
-0.1
+0.0
-0.0
-0.0
-0.0
facs on lipid accumulation
Sorted No BODIPY Gate
-0.1
+0.2
-0.5
+0.4
-0.1
ypd buoyancy
40 hrs High Buoyancy
+0.0
+0.2
-0.2
-0.0
-0.0
buoyancy on lipid accumulation
40 hrs Low Buoyancy
-0.3
+0.2
-0.2
+0.2
-0.0
auxotrophy
YNB Glucose 75mM Arginine
-0.1
+0.1
-0.2
-0.0
+0.0
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
+0.1
+0.3
-0.2
+0.0
-0.3
auxotrophy
Dropout Complete
-0.2
+0.0
+0.5
-0.2
+0.1
ypd buoyancy
40 hrs Median Buoyancy
-0.1
+0.2
+0.2
-0.1
+0.1
auxotrophy
YNB Glucose 75mM Methionine
-0.1
+0.2
+0.1
+0.0
+0.3
auxotrophy
YNB Glucose
+0.1
+0.2
+0.3
-0.1
+0.1
growth on ypd
YPD
+0.6
+0.1
+0.3
-0.1
+0.2
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