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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
14996 and 14997 are separated by 360 nucleotides
14997 and 14998 are separated by 269 nucleotides
14998 and 14999 are separated by 987 nucleotides
14999 and 15000 are separated by 1505 nucleotides
mRNA_6628: 14996 - KOG0446 Vacuolar sorting protein VPS1, dynamin, and related proteins, at 1,284,165 to 1,286,987
14996
mRNA_6629: 14997 - KOG0538 Glycolate oxidase, at 1,287,348 to 1,288,864
14997
mRNA_6630: 14998 - KOG0463 GTP-binding protein GP-1, at 1,289,134 to 1,291,878
14998
mRNA_6631: 14999 - K11429 SUV420H histone-lysine N-methyltransferase SUV420H, at 1,292,866 to 1,293,273
14999
mRNA_6632: 15000 - BLAST histone-lysine N-methyltransferase SUV420H [Rhodo..., at 1,294,779 to 1,296,409
15000
Group
Condition
mRNA
_6628
mRNA
_6629
mRNA
_6630
mRNA
_6631
mRNA
_6632
14996
14997
14998
14999
15000
ypd buoyancy
40 hrs No Buoyancy Separation
-0.3
-0.3
-0.3
-0.5
-0.7
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-0.3
-0.6
+0.1
-0.5
-0.7
buoyancy on lipid accumulation
40 hrs High Buoyancy
-0.0
-0.5
-0.1
-0.2
-0.5
buoyancy on lipid accumulation
40 hrs Low Buoyancy
-0.0
-0.7
-0.2
-0.3
-0.0
growth on ypd
YPD
+0.2
-0.4
+0.0
+0.0
-0.6
growth on ricinoleic acid
YNB Ricinoleic Acid
+0.2
+0.4
-0.2
-0.2
-0.9
ypd buoyancy
40 hrs Low Buoyancy
-0.0
-0.3
+0.3
-0.1
-0.6
facs on lipid accumulation
Sorted Low BODIPY Gate
-0.2
-0.1
-0.4
-0.2
+0.2
growth on oleic acid
YNB Oleic Acid
+0.0
+0.1
-0.1
+0.0
-0.4
facs on lipid accumulation
Sorted High BODIPY Gate
-0.1
+0.3
-0.4
-0.3
+0.2
facs on lipid accumulation
Sorted No BODIPY Gate
-0.1
+0.3
-0.1
-0.5
+0.2
growth on oleic acid
YNB Glucose
+0.1
+0.2
-0.2
-0.3
+0.1
auxotrophy
Dropout Complete
+0.1
+0.2
-0.2
+0.1
-0.3
ypd buoyancy
40 hrs High Buoyancy
-0.0
-0.0
-0.0
-0.1
+0.1
auxotrophy
YNB Glucose
+0.1
+0.0
-0.3
+0.5
-0.4
auxotrophy
YNB Glucose 75mM Methionine
+0.3
+0.2
-0.2
-0.2
-0.1
buoyancy on lipid accumulation
40 hrs Median Buoyancy
-0.0
-0.2
+0.0
+0.4
-0.2
ypd buoyancy
40 hrs Median Buoyancy
+0.1
-0.1
+0.0
-0.1
+0.2
growth on ricinoleic acid
YNB Glucose
+0.1
+0.3
-0.3
+0.7
-0.2
auxotrophy
YNB Glucose 75mM Arginine
+0.0
+0.4
-0.2
+0.3
+0.0
growth on ricinoleic acid
YNB Methylricinoleic Acid
+0.3
+0.6
-0.2
-0.3
+0.3
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