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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
14998 and 14999 are separated by 987 nucleotides
14999 and 15000 are separated by 1505 nucleotides
15000 and 15001 are separated by 311 nucleotides
15001 and 15002 are separated by 656 nucleotides
mRNA_6630: 14998 - KOG0463 GTP-binding protein GP-1, at 1,289,134 to 1,291,878
14998
mRNA_6631: 14999 - K11429 SUV420H histone-lysine N-methyltransferase SUV420H, at 1,292,866 to 1,293,273
14999
mRNA_6632: 15000 - BLAST histone-lysine N-methyltransferase SUV420H [Rhodo..., at 1,294,779 to 1,296,409
15000
mRNA_6633: 15001 - KOG1114 Tripeptidyl peptidase II, at 1,296,721 to 1,300,268
15001
mRNA_6634: 15002 - K02734 PSMB2 20S proteasome subunit beta 4, at 1,300,925 to 1,301,957
15002
Group
Condition
mRNA
_6630
mRNA
_6631
mRNA
_6632
mRNA
_6633
mRNA
_6634
14998
14999
15000
15001
15002
growth on ricinoleic acid
YNB Ricinoleic Acid
-0.2
-0.2
-0.9
+0.1
N.D.
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
+0.1
-0.5
-0.7
-0.1
N.D.
ypd buoyancy
40 hrs No Buoyancy Separation
-0.3
-0.5
-0.7
+0.5
N.D.
buoyancy on lipid accumulation
40 hrs Low Buoyancy
-0.2
-0.3
-0.0
-0.2
N.D.
buoyancy on lipid accumulation
40 hrs High Buoyancy
-0.1
-0.2
-0.5
+0.1
N.D.
growth on ypd
YPD
+0.0
+0.0
-0.6
+0.0
N.D.
growth on oleic acid
YNB Oleic Acid
-0.1
+0.0
-0.4
-0.1
N.D.
ypd buoyancy
40 hrs Low Buoyancy
+0.3
-0.1
-0.6
+0.0
N.D.
auxotrophy
YNB Glucose 75mM Methionine
-0.2
-0.2
-0.1
+0.1
N.D.
facs on lipid accumulation
Sorted No BODIPY Gate
-0.1
-0.5
+0.2
+0.1
N.D.
growth on oleic acid
YNB Glucose
-0.2
-0.3
+0.1
+0.1
N.D.
auxotrophy
Dropout Complete
-0.2
+0.1
-0.3
+0.0
N.D.
growth on ricinoleic acid
YNB Methylricinoleic Acid
-0.2
-0.3
+0.3
+0.0
N.D.
facs on lipid accumulation
Sorted Low BODIPY Gate
-0.4
-0.2
+0.2
+0.2
N.D.
facs on lipid accumulation
Sorted High BODIPY Gate
-0.4
-0.3
+0.2
+0.4
N.D.
auxotrophy
YNB Glucose
-0.3
+0.5
-0.4
+0.2
N.D.
ypd buoyancy
40 hrs High Buoyancy
-0.0
-0.1
+0.1
+0.1
N.D.
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+0.0
+0.4
-0.2
-0.1
N.D.
ypd buoyancy
40 hrs Median Buoyancy
+0.0
-0.1
+0.2
+0.1
N.D.
auxotrophy
YNB Glucose 75mM Arginine
-0.2
+0.3
+0.0
+0.1
N.D.
growth on ricinoleic acid
YNB Glucose
-0.3
+0.7
-0.2
+0.2
N.D.
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