Fitness for 5 genes in Rhodosporidium toruloides IFO0880

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Top 21 experiments (either direction), sorted by average fitness

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500 nt 14998 and 14999 are separated by 987 nucleotides14999 and 15000 are separated by 1505 nucleotides15000 and 15001 are separated by 311 nucleotides15001 and 15002 are separated by 656 nucleotides mRNA_6630: 14998 - KOG0463 GTP-binding protein GP-1, at 1,289,134 to 1,291,878 14998 mRNA_6631: 14999 - K11429 SUV420H histone-lysine N-methyltransferase SUV420H, at 1,292,866 to 1,293,273 14999 mRNA_6632: 15000 - BLAST histone-lysine N-methyltransferase SUV420H [Rhodo..., at 1,294,779 to 1,296,409 15000 mRNA_6633: 15001 - KOG1114 Tripeptidyl peptidase II, at 1,296,721 to 1,300,268 15001 mRNA_6634: 15002 - K02734 PSMB2 20S proteasome subunit beta 4, at 1,300,925 to 1,301,957 15002
Group Condition mRNA_6630 mRNA_6631 mRNA_6632 mRNA_6633 mRNA_6634
14998 14999 15000 15001 15002
growth on ricinoleic acid YNB Ricinoleic Acid -0.2 -0.2 -0.9 +0.1 N.D.
buoyancy on lipid accumulation 40 hrs No Buoyancy Separation +0.1 -0.5 -0.7 -0.1 N.D.
ypd buoyancy 40 hrs No Buoyancy Separation -0.3 -0.5 -0.7 +0.5 N.D.
buoyancy on lipid accumulation 40 hrs Low Buoyancy -0.2 -0.3 -0.0 -0.2 N.D.
buoyancy on lipid accumulation 40 hrs High Buoyancy -0.1 -0.2 -0.5 +0.1 N.D.
growth on ypd YPD +0.0 +0.0 -0.6 +0.0 N.D.
growth on oleic acid YNB Oleic Acid -0.1 +0.0 -0.4 -0.1 N.D.
ypd buoyancy 40 hrs Low Buoyancy +0.3 -0.1 -0.6 +0.0 N.D.
auxotrophy YNB Glucose 75mM Methionine -0.2 -0.2 -0.1 +0.1 N.D.
facs on lipid accumulation Sorted No BODIPY Gate -0.1 -0.5 +0.2 +0.1 N.D.
growth on oleic acid YNB Glucose -0.2 -0.3 +0.1 +0.1 N.D.
auxotrophy Dropout Complete -0.2 +0.1 -0.3 +0.0 N.D.
growth on ricinoleic acid YNB Methylricinoleic Acid -0.2 -0.3 +0.3 +0.0 N.D.
facs on lipid accumulation Sorted Low BODIPY Gate -0.4 -0.2 +0.2 +0.2 N.D.
facs on lipid accumulation Sorted High BODIPY Gate -0.4 -0.3 +0.2 +0.4 N.D.
auxotrophy YNB Glucose -0.3 +0.5 -0.4 +0.2 N.D.
ypd buoyancy 40 hrs High Buoyancy -0.0 -0.1 +0.1 +0.1 N.D.
buoyancy on lipid accumulation 40 hrs Median Buoyancy +0.0 +0.4 -0.2 -0.1 N.D.
ypd buoyancy 40 hrs Median Buoyancy +0.0 -0.1 +0.2 +0.1 N.D.
auxotrophy YNB Glucose 75mM Arginine -0.2 +0.3 +0.0 +0.1 N.D.
growth on ricinoleic acid YNB Glucose -0.3 +0.7 -0.2 +0.2 N.D.
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