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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
15004 and 15005 are separated by 210 nucleotides
15005 and 15006 are separated by 223 nucleotides
15006 and 15007 are separated by 1116 nucleotides
15007 and 15008 are separated by 671 nucleotides
mRNA_6636: 15004 - K14403 CPSF3, YSH1 cleavage and polyadenylation specificity factor subunit 3, at 1,305,979 to 1,309,273
15004
mRNA_6637: 15005 - K15711 SMARCA3, HLTF SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A3, at 1,309,484 to 1,313,910
15005
mRNA_6638: 15006 - K02575 NRT, narK, nrtP, nasA MFS transporter, NNP family, nitrate/nitrite transporter, at 1,314,134 to 1,316,580
15006
mRNA_6639: 15007 - K00362 nirB nitrite reductase (NADH) large subunit, at 1,317,697 to 1,321,815
15007
mRNA_6640: 15008 - K10534 NR nitrate reductase (NAD(P)H), at 1,322,487 to 1,325,707
15008
Group
Condition
mRNA
_6636
mRNA
_6637
mRNA
_6638
mRNA
_6639
mRNA
_6640
15004
15005
15006
15007
15008
facs on lipid accumulation
Sorted Low BODIPY Gate
N.D.
N.D.
-1.0
-0.3
-0.4
facs on lipid accumulation
Sorted No BODIPY Gate
N.D.
N.D.
-0.5
-0.0
+0.0
growth on ricinoleic acid
YNB Ricinoleic Acid
N.D.
N.D.
-0.9
+0.1
+0.3
ypd buoyancy
40 hrs No Buoyancy Separation
N.D.
N.D.
-0.1
-0.3
-0.0
growth on oleic acid
YNB Glucose
N.D.
N.D.
-0.3
+0.0
-0.0
auxotrophy
Dropout Complete
N.D.
N.D.
-0.8
+0.4
+0.2
buoyancy on lipid accumulation
40 hrs Median Buoyancy
N.D.
N.D.
+0.2
-0.2
-0.1
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
N.D.
N.D.
+0.2
-0.2
-0.1
ypd buoyancy
40 hrs Low Buoyancy
N.D.
N.D.
-0.0
+0.0
-0.0
ypd buoyancy
40 hrs Median Buoyancy
N.D.
N.D.
-0.1
-0.0
+0.1
auxotrophy
YNB Glucose 75mM Methionine
N.D.
N.D.
-0.3
+0.2
+0.1
auxotrophy
YNB Glucose
N.D.
N.D.
-0.3
+0.2
+0.1
buoyancy on lipid accumulation
40 hrs Low Buoyancy
N.D.
N.D.
+0.0
-0.1
+0.1
growth on oleic acid
YNB Oleic Acid
N.D.
N.D.
-0.0
+0.0
+0.1
auxotrophy
YNB Glucose 75mM Arginine
N.D.
N.D.
-0.1
+0.2
+0.0
buoyancy on lipid accumulation
40 hrs High Buoyancy
N.D.
N.D.
+0.2
-0.1
+0.0
ypd buoyancy
40 hrs High Buoyancy
N.D.
N.D.
-0.0
+0.2
+0.0
growth on ypd
YPD
N.D.
N.D.
+0.3
-0.1
-0.0
growth on ricinoleic acid
YNB Methylricinoleic Acid
N.D.
N.D.
-0.3
+0.3
+0.3
growth on ricinoleic acid
YNB Glucose
N.D.
N.D.
-0.0
+0.1
+0.3
facs on lipid accumulation
Sorted High BODIPY Gate
N.D.
N.D.
+0.1
+0.1
+0.2
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