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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
15005 and 15006 are separated by 223 nucleotides
15006 and 15007 are separated by 1116 nucleotides
15007 and 15008 are separated by 671 nucleotides
15008 and 15009 are separated by 651 nucleotides
mRNA_6637: 15005 - K15711 SMARCA3, HLTF SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A3, at 1,309,484 to 1,313,910
15005
mRNA_6638: 15006 - K02575 NRT, narK, nrtP, nasA MFS transporter, NNP family, nitrate/nitrite transporter, at 1,314,134 to 1,316,580
15006
mRNA_6639: 15007 - K00362 nirB nitrite reductase (NADH) large subunit, at 1,317,697 to 1,321,815
15007
mRNA_6640: 15008 - K10534 NR nitrate reductase (NAD(P)H), at 1,322,487 to 1,325,707
15008
mRNA_6641: 15009 - K11863 ATXN3, MJD Ataxin-3, at 1,326,359 to 1,327,984
15009
Group
Condition
mRNA
_6637
mRNA
_6638
mRNA
_6639
mRNA
_6640
mRNA
_6641
15005
15006
15007
15008
15009
facs on lipid accumulation
Sorted Low BODIPY Gate
N.D.
-1.0
-0.3
-0.4
-0.5
growth on ricinoleic acid
YNB Ricinoleic Acid
N.D.
-0.9
+0.1
+0.3
-0.2
facs on lipid accumulation
Sorted No BODIPY Gate
N.D.
-0.5
-0.0
+0.0
+0.1
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
N.D.
+0.2
-0.2
-0.1
-0.4
auxotrophy
Dropout Complete
N.D.
-0.8
+0.4
+0.2
-0.1
growth on oleic acid
YNB Glucose
N.D.
-0.3
+0.0
-0.0
+0.1
auxotrophy
YNB Glucose 75mM Methionine
N.D.
-0.3
+0.2
+0.1
-0.2
growth on ypd
YPD
N.D.
+0.3
-0.1
-0.0
-0.4
auxotrophy
YNB Glucose 75mM Arginine
N.D.
-0.1
+0.2
+0.0
-0.3
auxotrophy
YNB Glucose
N.D.
-0.3
+0.2
+0.1
-0.2
facs on lipid accumulation
Sorted High BODIPY Gate
N.D.
+0.1
+0.1
+0.2
-0.5
buoyancy on lipid accumulation
40 hrs Low Buoyancy
N.D.
+0.0
-0.1
+0.1
-0.1
buoyancy on lipid accumulation
40 hrs Median Buoyancy
N.D.
+0.2
-0.2
-0.1
+0.0
growth on ricinoleic acid
YNB Methylricinoleic Acid
N.D.
-0.3
+0.3
+0.3
-0.3
growth on ricinoleic acid
YNB Glucose
N.D.
-0.0
+0.1
+0.3
-0.3
growth on oleic acid
YNB Oleic Acid
N.D.
-0.0
+0.0
+0.1
+0.1
ypd buoyancy
40 hrs Median Buoyancy
N.D.
-0.1
-0.0
+0.1
+0.3
buoyancy on lipid accumulation
40 hrs High Buoyancy
N.D.
+0.2
-0.1
+0.0
+0.2
ypd buoyancy
40 hrs No Buoyancy Separation
N.D.
-0.1
-0.3
-0.0
+0.8
ypd buoyancy
40 hrs Low Buoyancy
N.D.
-0.0
+0.0
-0.0
+0.4
ypd buoyancy
40 hrs High Buoyancy
N.D.
-0.0
+0.2
+0.0
+0.8
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